Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I653_RS12040 Genome accession   NC_020832
Coordinates   2423921..2424688 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2418921..2429688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS12020 (I653_12130) ppsR 2419095..2419907 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  I653_RS12025 (I653_12135) ccpN 2419933..2420571 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  I653_RS12030 (I653_12140) glyS 2420704..2422743 (-) 2040 WP_015384117.1 glycine--tRNA ligase subunit beta -
  I653_RS12035 (I653_12145) glyQ 2422736..2423623 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  I653_RS12040 (I653_12150) recO 2423921..2424688 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  I653_RS20565 (I653_12155) yqzL 2424725..2424868 (-) 144 WP_003230053.1 YqzL family protein -
  I653_RS12045 (I653_12160) era 2425016..2425921 (-) 906 WP_003230051.1 GTPase Era -
  I653_RS12050 (I653_12165) - 2425902..2426312 (-) 411 WP_003230049.1 cytidine deaminase -
  I653_RS12055 (I653_12170) unpK 2426431..2426802 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  I653_RS12060 (I653_12175) ybeY 2426783..2427256 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  I653_RS12065 (I653_12180) pgpH 2427257..2429392 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=57529 I653_RS12040 WP_015384118.1 2423921..2424688(-) (recO) [Bacillus subtilis subsp. subtilis str. BAB-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=57529 I653_RS12040 WP_015384118.1 2423921..2424688(-) (recO) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment