Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KMP11_RS05790 Genome accession   NZ_CP076443
Coordinates   1152368..1153753 (-) Length   461 a.a.
NCBI ID   WP_216279686.1    Uniprot ID   A0A975XN88
Organism   Gemella sp. zg-570     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1147368..1158753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMP11_RS05770 (KMP11_05775) smpB 1148254..1148715 (-) 462 WP_215756577.1 SsrA-binding protein SmpB -
  KMP11_RS05775 (KMP11_05780) rnr 1148718..1150895 (-) 2178 WP_216279685.1 ribonuclease R -
  KMP11_RS05780 (KMP11_05785) secG 1150971..1151201 (-) 231 WP_215756579.1 preprotein translocase subunit SecG -
  KMP11_RS05785 (KMP11_05790) - 1151263..1152345 (-) 1083 WP_215756580.1 PIN/TRAM domain-containing protein -
  KMP11_RS05790 (KMP11_05795) radA 1152368..1153753 (-) 1386 WP_216279686.1 DNA repair protein RadA Machinery gene
  KMP11_RS05795 (KMP11_05800) - 1153762..1156230 (-) 2469 WP_215756582.1 ATP-dependent Clp protease ATP-binding subunit -
  KMP11_RS07955 (KMP11_05805) - 1156230..1156754 (-) 525 WP_215756583.1 CtsR family transcriptional regulator -
  KMP11_RS05805 (KMP11_05810) - 1156904..1157629 (-) 726 WP_215756584.1 amino acid ABC transporter ATP-binding protein -
  KMP11_RS05810 (KMP11_05815) - 1157640..1158281 (-) 642 WP_215756585.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51450.51 Da        Isoelectric Point: 7.6118

>NTDB_id=575288 KMP11_RS05790 WP_216279686.1 1152368..1153753(-) (radA) [Gemella sp. zg-570]
MAKKISTKYECDACGYQSIKYLGKCPNCNKWGSMEEVKEVKISDKHRTYMPEENSKATVAVEKLKNISTQDVPRTLTDSN
ELNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISSYLADKSDVVYVSGEESVRQVKVRADRMKVSTDELYVYSQTDLNLI
YEIIKKIKPKFLVIDSIQTVYNPNLENSPGSITQVRECTQQLMKIAKNLNIAIFIVGHVTKEGTIAGPKMLEHMVDTVLY
FEGEEHHFYRILRAVKNRFGSTNELGIFEMQSSGLVDMDNPSQIFLEERSKELSGASIVGIMEGTRPLLVEIQSLTTPTA
FNNPRRISSGLEYNKLVLLMAVLEKKAAYLLQQQDVYVKVAGGVKIDDPAVDLGVLVAVASSFKDVAINMYDCFIGEVGL
TGEIRRVSRIEQRIAEAKKHGFKRIFVPYGNKKGIEFPSDVEILPIRNINECLDIIFKNTF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=575288 KMP11_RS05790 WP_216279686.1 1152368..1153753(-) (radA) [Gemella sp. zg-570]
ATGGCAAAAAAAATTTCAACAAAATATGAATGTGATGCGTGTGGTTATCAAAGTATAAAATATTTAGGAAAATGCCCCAA
CTGTAATAAATGGGGCTCTATGGAAGAAGTAAAAGAAGTAAAAATCAGCGATAAGCACAGAACATATATGCCAGAAGAAA
ATTCTAAGGCAACTGTTGCGGTAGAAAAATTAAAAAATATTTCAACACAAGATGTACCTAGAACTCTAACTGATAGCAAT
GAATTAAATAGAGTTTTAGGTGGTGGAATTGTCCCAGGTTCACTTATATTGATAGGGGGAGATCCAGGTATAGGCAAATC
AACCTTATTACTACAAATTTCATCTTATCTTGCTGATAAATCTGATGTCGTATATGTTTCTGGTGAAGAATCTGTAAGGC
AGGTAAAGGTTCGTGCCGATAGAATGAAAGTTAGTACGGATGAATTATATGTCTATTCACAAACTGACTTAAATCTTATA
TATGAAATAATAAAAAAAATAAAACCAAAATTTTTAGTTATTGATTCTATACAAACAGTCTATAATCCAAATTTAGAAAA
TTCTCCTGGTAGTATCACCCAAGTTCGTGAGTGTACACAACAACTTATGAAAATTGCTAAAAATTTAAATATAGCAATAT
TTATAGTTGGGCATGTAACAAAAGAAGGAACGATAGCTGGACCTAAAATGTTAGAACACATGGTAGATACAGTTTTATAC
TTTGAAGGAGAAGAACACCACTTTTATAGAATTTTAAGAGCAGTAAAAAATCGTTTTGGCTCTACCAACGAACTTGGAAT
TTTTGAAATGCAAAGTTCTGGTTTAGTAGATATGGATAATCCTTCCCAAATATTTTTAGAAGAGAGAAGCAAGGAACTAT
CTGGTGCTTCTATAGTAGGAATTATGGAGGGGACTAGACCACTTTTAGTAGAGATACAATCATTAACTACACCTACAGCC
TTTAATAATCCTAGAAGAATTTCATCAGGTTTGGAATATAATAAACTGGTACTGCTTATGGCAGTGTTAGAAAAAAAGGC
GGCTTATCTACTGCAACAACAAGATGTTTATGTAAAAGTTGCAGGAGGAGTAAAAATAGATGACCCAGCTGTAGACTTAG
GAGTTTTAGTAGCAGTAGCATCTAGTTTTAAAGATGTAGCAATAAATATGTATGATTGTTTTATAGGAGAAGTAGGTCTT
ACAGGAGAAATAAGGAGAGTCAGTAGAATAGAACAACGTATTGCTGAAGCTAAAAAACATGGTTTTAAAAGAATATTTGT
TCCATACGGTAACAAAAAAGGTATAGAATTTCCAAGTGATGTGGAAATTCTACCTATAAGAAATATTAATGAATGTTTAG
ATATAATATTTAAAAATACATTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-431)

AAA domain (AAA_25)

(76-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

57.33

99.132

0.568
  radA Streptococcus pneumoniae Rx1

57.33

99.132

0.568
  radA Streptococcus pneumoniae D39

57.33

99.132

0.568
  radA Streptococcus mitis SK321

57.33

99.132

0.568
  radA Streptococcus pneumoniae TIGR4

57.33

99.132

0.568
  radA Streptococcus mitis NCTC 12261

57.33

99.132

0.568
  radA Bacillus subtilis subsp. subtilis str. 168

56.763

97.831

0.555