Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG07_RS01510 Genome accession   NZ_CP094116
Coordinates   293998..295047 (-) Length   349 a.a.
NCBI ID   WP_245046027.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe066     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 288998..300047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG07_RS01490 (MPG07_01490) rpsL 290020..290427 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG07_RS01495 (MPG07_01495) rpsG 290443..290910 (+) 468 WP_180599752.1 30S ribosomal protein S7 -
  MPG07_RS01500 (MPG07_01500) fusA 290922..293000 (+) 2079 WP_000101843.1 elongation factor G -
  MPG07_RS01505 (MPG07_01505) - 293539..293811 (+) 273 WP_000744165.1 hypothetical protein -
  MPG07_RS01510 (MPG07_01510) waaF 293998..295047 (-) 1050 WP_245046027.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG07_RS01515 (MPG07_01515) hisS 295109..296437 (+) 1329 WP_180406876.1 histidine--tRNA ligase -
  MPG07_RS01520 (MPG07_01520) asd 296424..297464 (+) 1041 WP_245046031.1 aspartate-semialdehyde dehydrogenase -
  MPG07_RS01525 (MPG07_01525) - 297936..298097 (+) 162 WP_245046033.1 hypothetical protein -
  MPG07_RS01530 (MPG07_01530) - 298160..298399 (+) 240 Protein_296 DUF874 family protein -
  MPG07_RS01535 (MPG07_01535) - 298578..298973 (+) 396 Protein_297 DUF874 family protein -
  MPG07_RS01540 (MPG07_01540) - 298880..299287 (+) 408 WP_245046595.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39547.51 Da        Isoelectric Point: 9.8820

>NTDB_id=575276 MPG07_RS01510 WP_245046027.1 293998..295047(-) (waaF) [Helicobacter pylori strain Hpfe066]
MSVNAPKRMRILLRLPNWLGDGVMASPLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLLN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575276 MPG07_RS01510 WP_245046027.1 293998..295047(-) (waaF) [Helicobacter pylori strain Hpfe066]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCTTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTAAGCCATGCGATAATTTCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTGCTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
CTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.235

97.421

0.372