Detailed information NTG0575266

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KOM05_RS17685
• Genome accession: NZ_CP076414
• Coordinates: 3581563..3582708 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain NJ13
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576563..3587708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KOM05_RS17665 (KOM05_17550)	-	3577460..3577888 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
KOM05_RS17670 (KOM05_17555)	-	3578042..3578554 (+)	513	Protein_3429	bacteriocin biosynthesis protein AlbG	-
KOM05_RS17675 (KOM05_17560)	-	3578561..3579937 (-)	1377	WP_032875890.1	YncE family protein	-
KOM05_RS17680 (KOM05_17565)	-	3579977..3581332 (-)	1356	WP_032875887.1	YncE family protein	-
KOM05_RS17685 (KOM05_17570)	rapF	3581563..3582708 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
KOM05_RS17690 (KOM05_17575)	-	3582692..3582811 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
KOM05_RS17695 (KOM05_17580)	speB	3582934..3583806 (-)	873	WP_032875884.1	agmatinase	-
KOM05_RS17700 (KOM05_17585)	speE	3583865..3584695 (-)	831	WP_003151052.1	spermidine synthase	-
KOM05_RS17705 (KOM05_17590)	-	3584895..3586967 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
KOM05_RS17710 (KOM05_17595)	-	3586992..3587425 (-)	434	Protein_3437	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=575266 KOM05_RS17685 WP_074534220.1 3581563..3582708(+) (rapF) [Bacillus velezensis strain NJ13]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=575266 KOM05_RS17685 WP_074534220.1 3581563..3582708(+) (rapF) [Bacillus velezensis strain NJ13]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541