Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KOM05_RS16735 Genome accession   NZ_CP076414
Coordinates   3394199..3394888 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain NJ13     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3389199..3399888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM05_RS16700 (KOM05_16595) - 3389396..3389878 (-) 483 WP_032876168.1 flagellar protein FlgN -
  KOM05_RS16705 (KOM05_16600) flgM 3389893..3390159 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KOM05_RS16710 (KOM05_16605) - 3390229..3390648 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KOM05_RS16715 (KOM05_16610) comFC 3390722..3391411 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  KOM05_RS16720 (KOM05_16615) - 3391417..3391701 (-) 285 WP_003151389.1 competence protein ComFB -
  KOM05_RS16725 (KOM05_16620) comFA 3391759..3393144 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  KOM05_RS16730 (KOM05_16625) - 3393253..3394101 (-) 849 WP_032876160.1 DegV family protein -
  KOM05_RS16735 (KOM05_16630) degU 3394199..3394888 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KOM05_RS16740 (KOM05_16635) degS 3394965..3396128 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KOM05_RS16745 (KOM05_16640) - 3396351..3396998 (+) 648 WP_007614107.1 YigZ family protein -
  KOM05_RS16750 (KOM05_16645) - 3397003..3398184 (+) 1182 WP_032876157.1 LCP family protein -
  KOM05_RS16755 (KOM05_16650) - 3398283..3399359 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=575261 KOM05_RS16735 WP_003219701.1 3394199..3394888(-) (degU) [Bacillus velezensis strain NJ13]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=575261 KOM05_RS16735 WP_003219701.1 3394199..3394888(-) (degU) [Bacillus velezensis strain NJ13]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1