Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG80_RS05230 Genome accession   NZ_CP094115
Coordinates   1103822..1105747 (+) Length   641 a.a.
NCBI ID   WP_245055098.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe068     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1098822..1110747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG80_RS05205 (MPG80_05205) hofB 1099021..1100460 (-) 1440 WP_245055095.1 outer membrane beta-barrel protein HofB -
  MPG80_RS05210 (MPG80_05210) pyrB 1100755..1101678 (-) 924 WP_001124585.1 aspartate carbamoyltransferase -
  MPG80_RS05215 (MPG80_05215) - 1101745..1102260 (+) 516 WP_000523557.1 hypothetical protein -
  MPG80_RS05220 (MPG80_05220) - 1102260..1102967 (+) 708 WP_245055097.1 TlyA family RNA methyltransferase -
  MPG80_RS05225 (MPG80_05225) - 1102933..1103775 (+) 843 WP_000931624.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG80_RS05230 (MPG80_05230) recP/tkt 1103822..1105747 (+) 1926 WP_245055098.1 transketolase Machinery gene
  MPG80_RS05235 (MPG80_05235) - 1105744..1108080 (+) 2337 WP_245055100.1 PD-(D/E)XK nuclease family protein -
  MPG80_RS05240 (MPG80_05240) - 1108077..1110605 (+) 2529 WP_245055102.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70425.68 Da        Isoelectric Point: 6.7294

>NTDB_id=575252 MPG80_RS05230 WP_245055098.1 1103822..1105747(+) (recP/tkt) [Helicobacter pylori strain Hpfe068]
MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKRSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWKKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLNAPSGLILSRQNLPVLDEVSKERVLKGAYVKYDAKNPAITLVASGSEVSLALESAKILERENIPT
QVVSAPCFDLLVEQDEGYFKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575252 MPG80_RS05230 WP_245055098.1 1103822..1105747(+) (recP/tkt) [Helicobacter pylori strain Hpfe068]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTACGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGAGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGTGCTATCAATATTAGTTTTAGCGAGCAGGTTAAGATGCGTTTTTTAGCACAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCGATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGAAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTTTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCGT
CTAACAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGAGCGACGCACCAGCCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATACGGCTTGCATGCAAATAGCGTTAAGTTTGAACGCTCCTAGTGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTCTCTAAAGAGCGGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAACCCCGCTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTGTCTTTGGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCGCCATGCTTTGATTTATTGGTGGAACAAGATGAAGGCTATTTTAAAGAACTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTCAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(524-574)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.475

100

0.421