Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   I653_RS11525 Genome accession   NC_020832
Coordinates   2334040..2334843 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2329040..2339843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS11505 (I653_11600) glpQB 2330183..2330914 (-) 732 WP_015384062.1 glycerophosphodiester phosphodiesterase -
  I653_RS11510 (I653_11605) yqiI 2330987..2331607 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  I653_RS11515 (I653_11610) - 2331627..2331923 (-) 297 WP_015384064.1 hypothetical protein -
  I653_RS21030 (I653_11615) - 2332231..2332383 (+) 153 WP_015384065.1 hypothetical protein -
  I653_RS11520 (I653_11620) yqiG 2332456..2333574 (+) 1119 WP_015483421.1 NADH-dependent flavin oxidoreductase -
  I653_RS11525 (I653_11630) spo0A 2334040..2334843 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  I653_RS11530 (I653_11635) spoIVB 2335108..2336388 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  I653_RS11535 (I653_11640) recN 2336563..2338293 (-) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  I653_RS11540 (I653_11645) argR 2338330..2338779 (-) 450 WP_015384067.1 arginine repressor ArgR -
  I653_RS11545 (I653_11650) yqxC 2338877..2339722 (-) 846 WP_015384068.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=57518 I653_RS11525 WP_003226427.1 2334040..2334843(-) (spo0A) [Bacillus subtilis subsp. subtilis str. BAB-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=57518 I653_RS11525 WP_003226427.1 2334040..2334843(-) (spo0A) [Bacillus subtilis subsp. subtilis str. BAB-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTCAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment