Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ZHX2020_RS12855 Genome accession   NZ_CP076409
Coordinates   2400247..2400696 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus sp. ZHX3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2395247..2405696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZHX2020_RS12815 (ZHX2020_12760) - 2395572..2395769 (+) 198 WP_121509395.1 hypothetical protein -
  ZHX2020_RS12820 (ZHX2020_12765) - 2395789..2396244 (+) 456 WP_014478793.1 RDD family protein -
  ZHX2020_RS12825 (ZHX2020_12770) - 2396326..2396658 (+) 333 WP_014478794.1 YckD family protein -
  ZHX2020_RS12830 (ZHX2020_12775) - 2396786..2397208 (+) 423 WP_014478795.1 MarR family transcriptional regulator -
  ZHX2020_RS12835 (ZHX2020_12780) - 2397196..2397516 (+) 321 WP_014478796.1 DUF3147 family protein -
  ZHX2020_RS12840 (ZHX2020_12785) - 2397535..2398279 (+) 745 Protein_2488 AAA family ATPase -
  ZHX2020_RS12845 (ZHX2020_12790) bglC 2398352..2399785 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  ZHX2020_RS12850 (ZHX2020_12795) nin/comJ 2399822..2400220 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  ZHX2020_RS12855 (ZHX2020_12800) nucA/comI 2400247..2400696 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  ZHX2020_RS12860 (ZHX2020_12805) tlpC 2400864..2402585 (-) 1722 Protein_2492 methyl-accepting chemotaxis protein TlpC -
  ZHX2020_RS12865 (ZHX2020_12810) hxlB 2402696..2403253 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  ZHX2020_RS12870 (ZHX2020_12815) hxlA 2403259..2403891 (-) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  ZHX2020_RS12875 (ZHX2020_12820) hxlR 2404120..2404482 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=575146 ZHX2020_RS12855 WP_014475770.1 2400247..2400696(-) (nucA/comI) [Bacillus sp. ZHX3]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=575146 ZHX2020_RS12855 WP_014475770.1 2400247..2400696(-) (nucA/comI) [Bacillus sp. ZHX3]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987