Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG24_RS05395 Genome accession   NZ_CP094110
Coordinates   1146043..1147968 (+) Length   641 a.a.
NCBI ID   WP_245103729.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141043..1152968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG24_RS05370 (MPG24_05370) hofB 1141259..1142698 (-) 1440 WP_245103721.1 outer membrane beta-barrel protein HofB -
  MPG24_RS05375 (MPG24_05375) pyrB 1142976..1143899 (-) 924 WP_245103723.1 aspartate carbamoyltransferase -
  MPG24_RS05380 (MPG24_05380) - 1143966..1144481 (+) 516 WP_000523557.1 hypothetical protein -
  MPG24_RS05385 (MPG24_05385) - 1144481..1145188 (+) 708 WP_245103725.1 TlyA family RNA methyltransferase -
  MPG24_RS05390 (MPG24_05390) - 1145154..1145996 (+) 843 WP_245103727.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG24_RS05395 (MPG24_05395) recP/tkt 1146043..1147968 (+) 1926 WP_245103729.1 transketolase Machinery gene
  MPG24_RS05400 (MPG24_05400) - 1147965..1150301 (+) 2337 WP_245103731.1 PD-(D/E)XK nuclease family protein -
  MPG24_RS05405 (MPG24_05405) - 1150298..1152850 (+) 2553 WP_245103733.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70440.67 Da        Isoelectric Point: 6.6527

>NTDB_id=575131 MPG24_RS05395 WP_245103729.1 1146043..1147968(+) (recP/tkt) [Helicobacter pylori strain Hpfe071]
MRLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPVEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKERVLKGAYVKYDAKNPVITLVASGSEVSLALESAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFANKIIGMDSFGSSAKGDKLFEKFGFSVENITAQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575131 MPG24_RS05395 WP_245103729.1 1146043..1147968(+) (recP/tkt) [Helicobacter pylori strain Hpfe071]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAGGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGGGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTTAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGAGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCAT
CTAACAACACGCAGTTGAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCAGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTGTAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCTAGC
GATGCTTTTGAAAATACCGCTTGCATGCAAGTGGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCGGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTGATTGAAGCGAGTCGCGCGATAGAGTGGTATCGTTTTGCGAATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCGCTCAAGCTAAAAGGTTGCTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.475

100

0.421