Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I653_RS07515 Genome accession   NC_020832
Coordinates   1476518..1476796 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471518..1481796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS20965 panEB 1472705..1473616 (+) 912 Protein_1475 ketopantoate reductase family protein -
  I653_RS07505 (I653_07420) ampS 1473650..1474882 (-) 1233 WP_015383558.1 aminopeptidase -
  I653_RS20355 (I653_07425) ykpC 1474992..1475126 (-) 135 WP_003238865.1 protein YkpC -
  I653_RS07510 (I653_07430) mreBH 1475227..1476234 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  I653_RS07515 (I653_07435) abrB 1476518..1476796 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  I653_RS07520 (I653_07440) kinC 1476986..1478272 (+) 1287 WP_015383559.1 two-component sensor histidine kinase KinC -
  I653_RS07525 (I653_07445) ykqA 1478288..1479115 (+) 828 WP_015483181.1 gamma-glutamylcyclotransferase -
  I653_RS07530 (I653_07450) ktrC 1479178..1479843 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  I653_RS07535 (I653_07455) ade 1479999..1481732 (+) 1734 WP_015383561.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=57513 I653_RS07515 WP_003244728.1 1476518..1476796(+) (abrB) [Bacillus subtilis subsp. subtilis str. BAB-1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=57513 I653_RS07515 WP_003244728.1 1476518..1476796(+) (abrB) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment