Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ZHX2020_RS00350 Genome accession   NZ_CP076409
Coordinates   54046..54666 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus sp. ZHX3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49046..59666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZHX2020_RS00310 (ZHX2020_00310) - 50178..50684 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  ZHX2020_RS00315 (ZHX2020_00315) - 50822..51241 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  ZHX2020_RS00320 (ZHX2020_00320) - 51262..51639 (-) 378 WP_004398696.1 YppG family protein -
  ZHX2020_RS00325 (ZHX2020_00325) - 51826..52014 (+) 189 WP_003230690.1 YppF family protein -
  ZHX2020_RS00330 (ZHX2020_00330) - 52053..52424 (-) 372 WP_003246080.1 YppE family protein -
  ZHX2020_RS00335 (ZHX2020_00335) - 52470..52715 (-) 246 WP_004398488.1 YppD family protein -
  ZHX2020_RS00340 (ZHX2020_00340) sspM 52914..53018 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ZHX2020_RS00345 (ZHX2020_00345) - 53043..54005 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  ZHX2020_RS00350 (ZHX2020_00350) recU 54046..54666 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  ZHX2020_RS00355 (ZHX2020_00355) - 54688..57432 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  ZHX2020_RS00360 (ZHX2020_00360) - 57508..58002 (-) 495 WP_009967579.1 YpoC family protein -
  ZHX2020_RS00365 (ZHX2020_00365) nth 57999..58658 (-) 660 WP_009967580.1 endonuclease III -
  ZHX2020_RS00370 (ZHX2020_00370) dnaD 58677..59375 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=575096 ZHX2020_RS00350 WP_014480105.1 54046..54666(+) (recU) [Bacillus sp. ZHX3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=575096 ZHX2020_RS00350 WP_014480105.1 54046..54666(+) (recU) [Bacillus sp. ZHX3]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995