Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JNUCC22_RS11945 Genome accession   NZ_CP076408
Coordinates   2490354..2491121 (-) Length   255 a.a.
NCBI ID   WP_012118014.1    Uniprot ID   A7Z6U2
Organism   Bacillus sp. JNUCC-22     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2485354..2496121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC22_RS11925 (JNUCC22_11925) - 2485556..2486368 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  JNUCC22_RS11930 (JNUCC22_11930) ccpN 2486394..2487032 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  JNUCC22_RS11935 (JNUCC22_11935) glyS 2487133..2489172 (-) 2040 WP_039063324.1 glycine--tRNA ligase subunit beta -
  JNUCC22_RS11940 (JNUCC22_11940) glyQ 2489165..2490052 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  JNUCC22_RS11945 (JNUCC22_11945) recO 2490354..2491121 (-) 768 WP_012118014.1 DNA repair protein RecO Machinery gene
  JNUCC22_RS11950 (JNUCC22_11950) - 2491158..2491301 (-) 144 WP_007408286.1 YqzL family protein -
  JNUCC22_RS11955 (JNUCC22_11955) era 2491457..2492362 (-) 906 WP_007408285.1 GTPase Era -
  JNUCC22_RS11960 (JNUCC22_11960) - 2492343..2492753 (-) 411 WP_003152976.1 cytidine deaminase -
  JNUCC22_RS11965 (JNUCC22_11965) - 2492877..2493251 (-) 375 WP_015240233.1 diacylglycerol kinase family protein -
  JNUCC22_RS11970 (JNUCC22_11970) ybeY 2493232..2493705 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  JNUCC22_RS11975 (JNUCC22_11975) - 2493706..2495838 (-) 2133 WP_007408284.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29310.95 Da        Isoelectric Point: 8.5625

>NTDB_id=575066 JNUCC22_RS11945 WP_012118014.1 2490354..2491121(-) (recO) [Bacillus sp. JNUCC-22]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPMSPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=575066 JNUCC22_RS11945 WP_012118014.1 2490354..2491121(-) (recO) [Bacillus sp. JNUCC-22]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGA
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATGTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z6U2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

88.627

100

0.886