Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JNUCC22_RS10375 Genome accession   NZ_CP076408
Coordinates   2159292..2159900 (+) Length   202 a.a.
NCBI ID   WP_216061697.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-22     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2154292..2164900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC22_RS10335 (JNUCC22_10335) - 2155246..2155752 (-) 507 WP_088461041.1 PTS glucose transporter subunit IIA -
  JNUCC22_RS10340 (JNUCC22_10340) - 2155891..2156304 (+) 414 WP_017418017.1 hypothetical protein -
  JNUCC22_RS10345 (JNUCC22_10345) - 2156334..2156867 (-) 534 WP_216061696.1 YppG family protein -
  JNUCC22_RS10350 (JNUCC22_10350) - 2157054..2157236 (+) 183 WP_003153532.1 YppF family protein -
  JNUCC22_RS10355 (JNUCC22_10355) - 2157275..2157643 (-) 369 WP_007409492.1 YppE family protein -
  JNUCC22_RS10360 (JNUCC22_10360) - 2157689..2157934 (-) 246 WP_012117836.1 DUF5446 family protein -
  JNUCC22_RS10365 (JNUCC22_10365) sspM 2158140..2158244 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  JNUCC22_RS10370 (JNUCC22_10370) - 2158288..2159250 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  JNUCC22_RS10375 (JNUCC22_10375) recU 2159292..2159900 (+) 609 WP_216061697.1 Holliday junction resolvase RecU Machinery gene
  JNUCC22_RS10380 (JNUCC22_10380) - 2159939..2162722 (+) 2784 WP_216061698.1 PBP1A family penicillin-binding protein -
  JNUCC22_RS10385 (JNUCC22_10385) - 2162798..2163289 (-) 492 WP_007612186.1 YpoC family protein -
  JNUCC22_RS10390 (JNUCC22_10390) nth 2163286..2163945 (-) 660 WP_007612187.1 endonuclease III -
  JNUCC22_RS10395 (JNUCC22_10395) dnaD 2163964..2164662 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23622.74 Da        Isoelectric Point: 9.6949

>NTDB_id=575055 JNUCC22_RS10375 WP_216061697.1 2159292..2159900(+) (recU) [Bacillus sp. JNUCC-22]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHAHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=575055 JNUCC22_RS10375 WP_216061697.1 2159292..2159900(+) (recU) [Bacillus sp. JNUCC-22]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGCTCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886