Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG17_RS05420 Genome accession   NZ_CP094107
Coordinates   1143336..1145261 (+) Length   641 a.a.
NCBI ID   WP_245017630.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1138336..1150261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS05395 (MPG17_05395) hofB 1138528..1139967 (-) 1440 WP_245017627.1 outer membrane beta-barrel protein HofB -
  MPG17_RS05400 (MPG17_05400) pyrB 1140263..1141192 (-) 930 WP_245017628.1 aspartate carbamoyltransferase -
  MPG17_RS05405 (MPG17_05405) - 1141259..1141774 (+) 516 WP_000523557.1 hypothetical protein -
  MPG17_RS05410 (MPG17_05410) - 1141774..1142481 (+) 708 WP_245017629.1 TlyA family RNA methyltransferase -
  MPG17_RS05415 (MPG17_05415) - 1142447..1143289 (+) 843 WP_000931624.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG17_RS05420 (MPG17_05420) recP/tkt 1143336..1145261 (+) 1926 WP_245017630.1 transketolase Machinery gene
  MPG17_RS05425 (MPG17_05425) - 1145270..1147606 (+) 2337 WP_245018298.1 PD-(D/E)XK nuclease family protein -
  MPG17_RS05430 (MPG17_05430) - 1147603..1150119 (+) 2517 WP_245017631.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70367.61 Da        Isoelectric Point: 6.7291

>NTDB_id=575050 MPG17_RS05420 WP_245017630.1 1143336..1145261(+) (recP/tkt) [Helicobacter pylori strain Hpfe074]
MQLSNADLERLKSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKQAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNTIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQAALSLNAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYGAKNPIITLVASGSEVSLALESAKMLERENIPT
QVVSAPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMNSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575050 MPG17_RS05420 WP_245017630.1 1143336..1145261(+) (recP/tkt) [Helicobacter pylori strain Hpfe074]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCGAATGCACTTCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCTGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGGGATAGGTTGGTTTTTAGTGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAACAAGCCATTTCTCATAAAGTCTATTGTTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGTGCTTCTTTAGCCGGGCACCTCAACTTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATCAATATTAGTTTTAGCGAACAGGTTAAGATGCGTTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCTTAAA
TAAAGAAGTGTTGAAACAATCCAAAGAAAACGCTCAAATCAATCCTAATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCTTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCATTAAAGGATTTTGATTTTAGCGCCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACAAG
AGTGAGTAACGGCATGATTTTAAACACTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCAT
CCAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGATAGCATTGGCGTGGGCG
AAGACGGGGCCACGCACCAGCCTATAGAACAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GATGCTTTTGAAAATACCGCTTGCATGCAAGCAGCGTTAAGTTTGAACGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGGTGCTAAAAATCCTATTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCGCCATGCTTTGATTTATTGATAGAGCAAGATGAAAGCTATCTTAAAGAACTTTTTAAGGGTAAAGT
TTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGAATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(527-577)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418