Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG17_RS05115 Genome accession   NZ_CP094107
Coordinates   1087484..1088659 (+) Length   391 a.a.
NCBI ID   WP_245017594.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082484..1093659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS05090 (MPG17_05090) - 1082742..1083638 (+) 897 WP_000697547.1 OriC activity response regulator -
  MPG17_RS05095 (MPG17_05095) - 1083863..1084729 (+) 867 WP_245018296.1 5'-3' exonuclease -
  MPG17_RS05100 (MPG17_05100) - 1084822..1086072 (-) 1251 WP_245017592.1 outer membrane family protein -
  MPG17_RS05105 (MPG17_05105) - 1086240..1087106 (+) 867 WP_245017593.1 DnaJ C-terminal domain-containing protein -
  MPG17_RS05110 (MPG17_05110) - 1087116..1087487 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG17_RS05115 (MPG17_05115) rarA 1087484..1088659 (+) 1176 WP_245017594.1 replication-associated recombination protein A Machinery gene
  MPG17_RS05120 (MPG17_05120) fur 1088820..1089272 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG17_RS05125 (MPG17_05125) - 1089295..1089792 (-) 498 WP_000780291.1 DUF2147 domain-containing protein -
  MPG17_RS05130 (MPG17_05130) - 1089789..1090325 (-) 537 WP_245017595.1 YhcH/YjgK/YiaL family protein -
  MPG17_RS05135 (MPG17_05135) fliY 1090354..1091211 (-) 858 WP_245017596.1 flagellar motor switch protein FliY -
  MPG17_RS05140 (MPG17_05140) fliM 1091215..1092279 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG17_RS05145 (MPG17_05145) - 1092272..1093048 (-) 777 WP_001916890.1 RNA polymerase sigma factor FliA -
  MPG17_RS05150 (MPG17_05150) - 1093026..1093340 (-) 315 WP_245017597.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43985.72 Da        Isoelectric Point: 8.1219

>NTDB_id=575048 MPG17_RS05115 WP_245017594.1 1087484..1088659(+) (rarA) [Helicobacter pylori strain Hpfe074]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHTFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETMQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNMAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575048 MPG17_RS05115 WP_245017594.1 1087484..1088659(+) (rarA) [Helicobacter pylori strain Hpfe074]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATACCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCATAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAAAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGATGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCACTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACATGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391