Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG17_RS01800 Genome accession   NZ_CP094107
Coordinates   365629..366864 (+) Length   411 a.a.
NCBI ID   WP_245018038.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360629..371864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS01785 (MPG17_01785) - 361035..362969 (+) 1935 WP_245018036.1 type IA DNA topoisomerase -
  MPG17_RS07645 - 362969..363097 (+) 129 WP_268217798.1 hypothetical protein -
  MPG17_RS01790 (MPG17_01790) - 363099..364091 (+) 993 Protein_348 VirB8/TrbF family protein -
  MPG17_RS01795 (MPG17_01795) - 364091..365632 (+) 1542 WP_245018037.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG17_RS01800 (MPG17_01800) comB10 365629..366864 (+) 1236 WP_245018038.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG17_RS01805 (MPG17_01805) - 366934..367227 (+) 294 WP_245018039.1 hypothetical protein -
  MPG17_RS01810 (MPG17_01810) - 367220..367483 (+) 264 WP_245018040.1 hypothetical protein -
  MPG17_RS01815 (MPG17_01815) - 367480..367779 (+) 300 WP_180509385.1 hypothetical protein -
  MPG17_RS01820 (MPG17_01820) - 367779..368720 (+) 942 WP_245018041.1 ATPase, T2SS/T4P/T4SS family -
  MPG17_RS01825 (MPG17_01825) - 368717..369172 (+) 456 WP_245018042.1 mobilization protein -
  MPG17_RS01830 (MPG17_01830) - 369169..369459 (+) 291 WP_000159818.1 hypothetical protein -
  MPG17_RS01835 (MPG17_01835) - 369460..370017 (+) 558 WP_245018043.1 hypothetical protein -
  MPG17_RS01840 (MPG17_01840) - 370018..371745 (+) 1728 WP_245018044.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46569.76 Da        Isoelectric Point: 9.9499

>NTDB_id=575036 MPG17_RS01800 WP_245018038.1 365629..366864(+) (comB10) [Helicobacter pylori strain Hpfe074]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKLNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQNPSFNYNTANEEEKTRLVILASRISSQKETQPPISIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRV
IGYYNPNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSCLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPTPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=575036 MPG17_RS01800 WP_245018038.1 365629..366864(+) (comB10) [Helicobacter pylori strain Hpfe074]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACTAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACACTTATTAAACCACAAAATCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAATCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGTC
ATAGGTTATTACAACCCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTTAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAGT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCTGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTACCCCTAAAAACAATGAAGTCTTGGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

56.458

65.937

0.372