Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   JNUCC22_RS05305 Genome accession   NZ_CP076408
Coordinates   1036360..1036938 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus sp. JNUCC-22     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031360..1041938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC22_RS05285 (JNUCC22_05285) - 1031860..1033152 (-) 1293 WP_216062189.1 globin-coupled sensor protein -
  JNUCC22_RS05290 (JNUCC22_05290) - 1033275..1034798 (-) 1524 WP_216062190.1 FAD-dependent oxidoreductase -
  JNUCC22_RS05295 (JNUCC22_05295) - 1034923..1035780 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  JNUCC22_RS05300 (JNUCC22_05300) - 1035811..1036044 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  JNUCC22_RS05305 (JNUCC22_05305) comK 1036360..1036938 (+) 579 WP_003155179.1 competence protein ComK Regulator
  JNUCC22_RS05310 (JNUCC22_05310) - 1037084..1037452 (+) 369 WP_012117235.1 iron chaperone -
  JNUCC22_RS05315 (JNUCC22_05315) - 1037479..1037850 (+) 372 Protein_993 iron chaperone -
  JNUCC22_RS05320 (JNUCC22_05320) - 1037972..1038481 (+) 510 WP_216062191.1 MepB family protein -
  JNUCC22_RS05325 (JNUCC22_05325) - 1038621..1039832 (-) 1212 WP_216062192.1 GNAT family N-acetyltransferase -
  JNUCC22_RS05330 (JNUCC22_05330) - 1039989..1040699 (-) 711 WP_216062193.1 YrpD family protein -
  JNUCC22_RS05335 (JNUCC22_05335) - 1040895..1041164 (+) 270 WP_024085094.1 excalibur calcium-binding domain-containing protein -
  JNUCC22_RS05340 (JNUCC22_05340) - 1041197..1041514 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=575036 JNUCC22_RS05305 WP_003155179.1 1036360..1036938(+) (comK) [Bacillus sp. JNUCC-22]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=575036 JNUCC22_RS05305 WP_003155179.1 1036360..1036938(+) (comK) [Bacillus sp. JNUCC-22]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTATGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823