Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG17_RS01525 Genome accession   NZ_CP094107
Coordinates   300996..302045 (-) Length   349 a.a.
NCBI ID   WP_245018010.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe074     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 295996..307045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG17_RS01505 (MPG17_01505) rpsL 297012..297419 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG17_RS01510 (MPG17_01510) rpsG 297435..297902 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG17_RS01515 (MPG17_01515) fusA 297914..299992 (+) 2079 WP_000101840.1 elongation factor G -
  MPG17_RS01520 (MPG17_01520) - 300520..300792 (+) 273 WP_000744165.1 hypothetical protein -
  MPG17_RS01525 (MPG17_01525) waaF 300996..302045 (-) 1050 WP_245018010.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG17_RS01530 (MPG17_01530) hisS 302107..303435 (+) 1329 WP_245018011.1 histidine--tRNA ligase -
  MPG17_RS01535 (MPG17_01535) asd 303422..304462 (+) 1041 WP_245018012.1 aspartate-semialdehyde dehydrogenase -
  MPG17_RS01540 (MPG17_01540) - 304893..306056 (+) 1164 Protein_298 DUF874 family protein -
  MPG17_RS01545 (MPG17_01545) - 306198..306941 (-) 744 WP_245018013.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39515.40 Da        Isoelectric Point: 9.8130

>NTDB_id=575034 MPG17_RS01525 WP_245018010.1 300996..302045(-) (waaF) [Helicobacter pylori strain Hpfe074]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILLGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSN
NAYNLCGKTSIEELIERIATLDLFITNDSGPMHVAVSAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575034 MPG17_RS01525 WP_245018010.1 300996..302045(-) (waaF) [Helicobacter pylori strain Hpfe074]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTATTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCTTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GAGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATCCAAT
AACGCTTACAATCTGTGTGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGTTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCTTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364