Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNUCC22_RS01775 Genome accession   NZ_CP076408
Coordinates   331597..332034 (-) Length   145 a.a.
NCBI ID   WP_216062073.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-22     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326597..337034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC22_RS01750 (JNUCC22_01750) - 327616..328752 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  JNUCC22_RS01755 (JNUCC22_01755) - 328767..329201 (+) 435 WP_216062071.1 RDD family protein -
  JNUCC22_RS01760 (JNUCC22_01760) - 329274..329597 (+) 324 WP_007409357.1 YckD family protein -
  JNUCC22_RS01765 (JNUCC22_01765) - 329701..331137 (+) 1437 WP_216062072.1 family 1 glycosylhydrolase -
  JNUCC22_RS01770 (JNUCC22_01770) nin/comJ 331178..331576 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  JNUCC22_RS01775 (JNUCC22_01775) nucA/comI 331597..332034 (-) 438 WP_216062073.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNUCC22_RS01780 (JNUCC22_01780) hxlB 332392..332949 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  JNUCC22_RS01785 (JNUCC22_01785) hxlA 332946..333581 (-) 636 WP_060563063.1 3-hexulose-6-phosphate synthase -
  JNUCC22_RS01790 (JNUCC22_01790) - 333814..334176 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16042.33 Da        Isoelectric Point: 8.4850

>NTDB_id=575026 JNUCC22_RS01775 WP_216062073.1 331597..332034(-) (nucA/comI) [Bacillus sp. JNUCC-22]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKGDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=575026 JNUCC22_RS01775 WP_216062073.1 331597..332034(-) (nucA/comI) [Bacillus sp. JNUCC-22]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGGGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641