Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF92_RS06535 Genome accession   NZ_CP094106
Coordinates   1371467..1371733 (+) Length   88 a.a.
NCBI ID   WP_154415622.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe075     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1366467..1376733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF92_RS06495 (MPF92_06495) - 1367494..1367802 (-) 309 WP_245024488.1 DUF1104 domain-containing protein -
  MPF92_RS06500 (MPF92_06500) - 1367741..1368143 (+) 403 Protein_1263 P-type conjugative transfer protein TrbL -
  MPF92_RS06505 (MPF92_06505) - 1368216..1368486 (+) 271 Protein_1264 CAAX protease -
  MPF92_RS06510 (MPF92_06510) - 1368541..1369322 (+) 782 Protein_1265 hypothetical protein -
  MPF92_RS06515 (MPF92_06515) - 1369342..1369635 (+) 294 WP_245023717.1 hypothetical protein -
  MPF92_RS06520 (MPF92_06520) - 1369642..1371168 (+) 1527 Protein_1267 hypothetical protein -
  MPF92_RS06530 (MPF92_06530) - 1371248..1371466 (+) 219 WP_245023720.1 virB2 type IV secretion protein -
  MPF92_RS06535 (MPF92_06535) comB3 1371467..1371733 (+) 267 WP_154415622.1 virB3 type IV secretion protein Machinery gene
  MPF92_RS06540 (MPF92_06540) comB4 1371780..1374149 (+) 2370 WP_245023721.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPF92_RS07935 (MPF92_06550) - 1374152..1375785 (+) 1634 Protein_1271 type IA DNA topoisomerase -
  MPF92_RS06555 (MPF92_06555) - 1375748..1375936 (-) 189 Protein_1272 DUF1104 domain-containing protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10197.00 Da        Isoelectric Point: 4.8782

>NTDB_id=575014 MPF92_RS06535 WP_154415622.1 1371467..1371733(+) (comB3) [Helicobacter pylori strain Hpfe075]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHAFFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=575014 MPF92_RS06535 WP_154415622.1 1371467..1371733(+) (comB3) [Helicobacter pylori strain Hpfe075]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGTTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398