Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   CTB89_RS06710 Genome accession   NZ_AP017891
Coordinates   1355106..1356257 (+) Length   383 a.a.
NCBI ID   WP_000020353.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1350106..1361257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB89_RS06685 - 1350458..1351744 (+) 1287 WP_000664781.1 pitrilysin family protein -
  CTB89_RS06690 - 1351744..1352448 (+) 705 WP_000646223.1 SDR family NAD(P)-dependent oxidoreductase -
  CTB89_RS06695 - 1352553..1353380 (+) 828 WP_000214892.1 YmfK family protein -
  CTB89_RS06700 - 1353399..1353791 (+) 393 WP_020977202.1 RodZ family helix-turn-helix domain-containing protein -
  CTB89_RS06705 pgsA 1353825..1354403 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CTB89_RS06710 cinA 1355106..1356257 (+) 1152 WP_000020353.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  CTB89_RS06715 recA 1356422..1357465 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  CTB89_RS06720 rny 1357819..1359378 (+) 1560 WP_001050913.1 ribonuclease Y -
  CTB89_RS06725 - 1359675..1359890 (-) 216 WP_000026308.1 hypothetical protein -
  CTB89_RS06730 - 1360064..1360861 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43225.55 Da        Isoelectric Point: 6.0928

>NTDB_id=57500 CTB89_RS06710 WP_000020353.1 1355106..1356257(+) (cinA) [Staphylococcus aureus strain GN3]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVPSAIILLEYDGVVYIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=57500 CTB89_RS06710 WP_000020353.1 1355106..1356257(+) (cinA) [Staphylococcus aureus strain GN3]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGAATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGCCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCTATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment