Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   I653_RS05455 Genome accession   NC_020832
Coordinates   1081909..1082487 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076909..1087487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS05435 (I653_05250) hemAT 1077420..1078718 (-) 1299 WP_015483047.1 heme-based aerotactic transducer HemAT -
  I653_RS05440 (I653_05255) comW 1078857..1080386 (-) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  I653_RS05445 (I653_05260) yhxC 1080498..1081355 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  I653_RS05450 (I653_05265) yhzC 1081383..1081616 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  I653_RS05455 (I653_05270) comK 1081909..1082487 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  I653_RS05460 (I653_05275) yhxD 1082534..1083433 (-) 900 WP_015483051.1 SDR family oxidoreductase -
  I653_RS05465 (I653_05280) yhjA 1083651..1083920 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  I653_RS05470 (I653_05285) yhjB 1083964..1085433 (-) 1470 WP_015483053.1 sodium:solute symporter -
  I653_RS05475 (I653_05290) yhjC 1085430..1085630 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  I653_RS05480 (I653_05295) - 1085829..1086200 (-) 372 WP_015383278.1 hypothetical protein -
  I653_RS05485 (I653_05300) yhjE 1086352..1086975 (+) 624 WP_010886465.1 VTT domain-containing protein -
  I653_RS05490 (I653_05305) lepB 1086977..1087483 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=57499 I653_RS05455 WP_015483050.1 1081909..1082487(+) (comK) [Bacillus subtilis subsp. subtilis str. BAB-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=57499 I653_RS05455 WP_015483050.1 1081909..1082487(+) (comK) [Bacillus subtilis subsp. subtilis str. BAB-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment