Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG65_RS05285 Genome accession   NZ_CP094105
Coordinates   1117552..1119477 (+) Length   641 a.a.
NCBI ID   WP_245071673.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1112552..1124477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS05260 (MPG65_05260) hofB 1112748..1114188 (-) 1441 Protein_1021 outer membrane beta-barrel protein HofB -
  MPG65_RS05265 (MPG65_05265) pyrB 1114485..1115408 (-) 924 WP_057112129.1 aspartate carbamoyltransferase -
  MPG65_RS05270 (MPG65_05270) - 1115475..1115990 (+) 516 WP_154422175.1 hypothetical protein -
  MPG65_RS05275 (MPG65_05275) - 1115990..1116697 (+) 708 WP_245071669.1 TlyA family RNA methyltransferase -
  MPG65_RS05280 (MPG65_05280) - 1116663..1117505 (+) 843 WP_245071671.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG65_RS05285 (MPG65_05285) recP/tkt 1117552..1119477 (+) 1926 WP_245071673.1 transketolase Machinery gene
  MPG65_RS05290 (MPG65_05290) - 1119474..1121810 (+) 2337 WP_245071675.1 PD-(D/E)XK nuclease family protein -
  MPG65_RS05295 (MPG65_05295) - 1121807..1124374 (+) 2568 WP_245071677.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70423.68 Da        Isoelectric Point: 6.5045

>NTDB_id=574964 MPG65_RS05285 WP_245071673.1 1117552..1119477(+) (recP/tkt) [Helicobacter pylori strain Hpfe076]
MRLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHDALEEAKKSIKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKGFDFSAINYPIFKKGESLATRVSNGMILNAIAKECESFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENAACMQVALSLNAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=574964 MPG65_RS05285 WP_245071673.1 1117552..1119477(+) (recP/tkt) [Helicobacter pylori strain Hpfe076]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAGAGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGACTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTTAATAGGGACAGGCTAGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGCTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACAACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATGACGCTTTAGAAGAAGCCAAAAAATCCATTAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGATTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGGTTTTGATTTTAGCGCCATCAATTACCCCATTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGAGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCGT
CTAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGAGCCACGCACCAACCCATAGAGCAATTGAGTCATTTACGCGCTTTGCCTAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATGCCGCTTGCATGCAAGTGGCGTTAAGTTTGAACGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTCTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCGCCGTGCTTTGATTTATTAGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
CTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.014

100

0.417