Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG65_RS01525 Genome accession   NZ_CP094105
Coordinates   299704..300753 (-) Length   349 a.a.
NCBI ID   WP_245072311.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe076     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 294704..305753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS01505 (MPG65_01505) rpsL 295589..295996 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG65_RS01510 (MPG65_01510) rpsG 296012..296479 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG65_RS01515 (MPG65_01515) fusA 296491..298569 (+) 2079 WP_000101840.1 elongation factor G -
  MPG65_RS01520 (MPG65_01520) - 299297..299515 (+) 219 WP_000744170.1 hypothetical protein -
  MPG65_RS01525 (MPG65_01525) waaF 299704..300753 (-) 1050 WP_245072311.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG65_RS01530 (MPG65_01530) hisS 300815..302143 (+) 1329 WP_245072312.1 histidine--tRNA ligase -
  MPG65_RS01535 (MPG65_01535) asd 302130..303170 (+) 1041 WP_245072313.1 aspartate-semialdehyde dehydrogenase -
  MPG65_RS01540 (MPG65_01540) - 303602..304699 (+) 1098 WP_245072314.1 DUF874 family protein -
  MPG65_RS01545 (MPG65_01545) - 304842..305585 (-) 744 WP_001916162.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39502.40 Da        Isoelectric Point: 9.8197

>NTDB_id=574949 MPG65_RS01525 WP_245072311.1 299704..300753(-) (waaF) [Helicobacter pylori strain Hpfe076]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDIKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIATLDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574949 MPG65_RS01525 WP_245072311.1 299704..300753(-) (waaF) [Helicobacter pylori strain Hpfe076]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCGTTTTATCTTAGTAGGTCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTTAGGTTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAACTGGATATAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGTTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTGTTCAAT
AACGCTTACAATCTGTGCGGAAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGTCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.791

98.567

0.372