Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG14_RS00710 Genome accession   NZ_CP094102
Coordinates   150720..151955 (-) Length   411 a.a.
NCBI ID   WP_245054142.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe078     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145720..156955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG14_RS00670 (MPG14_00670) - 145841..147567 (-) 1727 Protein_132 type IV secretory system conjugative DNA transfer family protein -
  MPG14_RS00675 (MPG14_00675) - 147568..148125 (-) 558 WP_245054137.1 hypothetical protein -
  MPG14_RS00680 (MPG14_00680) - 148126..148416 (-) 291 WP_140526853.1 hypothetical protein -
  MPG14_RS00685 (MPG14_00685) - 148413..148868 (-) 456 WP_245054139.1 mobilization protein -
  MPG14_RS00690 (MPG14_00690) - 148865..149805 (-) 941 Protein_136 ATPase, T2SS/T4P/T4SS family -
  MPG14_RS00695 (MPG14_00695) - 149805..150104 (-) 300 WP_121086536.1 hypothetical protein -
  MPG14_RS00700 (MPG14_00700) - 150101..150364 (-) 264 WP_245054141.1 hypothetical protein -
  MPG14_RS00705 (MPG14_00705) - 150357..150650 (-) 294 WP_000671327.1 hypothetical protein -
  MPG14_RS00710 (MPG14_00710) comB10 150720..151955 (-) 1236 WP_245054142.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG14_RS00715 (MPG14_00715) - 151952..153493 (-) 1542 WP_245054144.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG14_RS00720 (MPG14_00720) - 153493..154479 (-) 987 WP_245054146.1 VirB8/TrbF family protein -
  MPG14_RS07730 - 154481..154609 (-) 129 WP_001185488.1 hypothetical protein -
  MPG14_RS00725 (MPG14_00725) - 154609..156547 (-) 1939 Protein_144 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46571.59 Da        Isoelectric Point: 9.9481

>NTDB_id=574903 MPG14_RS00710 WP_245054142.1 150720..151955(-) (comB10) [Helicobacter pylori strain Hpfe078]
MKKLLLLLDHKIIKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQNPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKWSRA
IGYYNSNNKIGEYRLEIAWNRITTPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLNTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMQEQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=574903 MPG14_RS00710 WP_245054142.1 150720..151955(-) (comB10) [Helicobacter pylori strain Hpfe078]
ATGAAAAAACTTCTTTTACTTTTAGATCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGACTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAATCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTGGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAATGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAACCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAACACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCAAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTCATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

45.088

96.594

0.436