Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPF96_RS06840 Genome accession   NZ_CP094101
Coordinates   1422247..1423482 (+) Length   411 a.a.
NCBI ID   WP_245048851.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1417247..1428482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS06825 (MPF96_06825) - 1417658..1419592 (+) 1935 WP_245049899.1 type IA DNA topoisomerase -
  MPF96_RS07825 - 1419592..1419720 (+) 129 WP_001185489.1 hypothetical protein -
  MPF96_RS06830 (MPF96_06830) - 1419722..1420709 (+) 988 Protein_1329 VirB8/TrbF family protein -
  MPF96_RS06835 (MPF96_06835) - 1420709..1422250 (+) 1542 WP_245048849.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPF96_RS06840 (MPF96_06840) comB10 1422247..1423482 (+) 1236 WP_245048851.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF96_RS06845 (MPF96_06845) - 1423552..1423849 (+) 298 Protein_1332 hypothetical protein -
  MPF96_RS06850 (MPF96_06850) - 1423842..1424105 (+) 264 WP_245048853.1 hypothetical protein -
  MPF96_RS06855 (MPF96_06855) - 1424102..1424401 (+) 300 WP_180509385.1 hypothetical protein -
  MPF96_RS06860 (MPF96_06860) - 1424401..1425343 (+) 943 Protein_1335 ATPase, T2SS/T4P/T4SS family -
  MPF96_RS06865 (MPF96_06865) - 1425340..1425795 (+) 456 WP_245048854.1 mobilization protein -
  MPF96_RS06870 (MPF96_06870) - 1425792..1426082 (+) 291 WP_120872358.1 hypothetical protein -
  MPF96_RS06875 (MPF96_06875) - 1426083..1426640 (+) 558 WP_245048855.1 hypothetical protein -
  MPF96_RS06880 (MPF96_06880) - 1426641..1428368 (+) 1728 WP_245048856.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46430.41 Da        Isoelectric Point: 9.9548

>NTDB_id=574893 MPF96_RS06840 WP_245048851.1 1422247..1423482(+) (comB10) [Helicobacter pylori strain Hpfe079]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTRSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGSDVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMQEQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=574893 MPF96_RS06840 WP_245048851.1 1422247..1423482(+) (comB10) [Helicobacter pylori strain Hpfe079]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACTTCTATAAAAAATAGTGTTTCTAATACAAGATCCAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGATCTGATGTCAAAGGCTATAATGGCATGATAGGCACACTCCATAACAAAT
ACTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCAAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.793

70.56

0.38