Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG36_RS01510 Genome accession   NZ_CP094099
Coordinates   295987..297036 (-) Length   349 a.a.
NCBI ID   WP_245017167.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290987..302036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS01490 (MPG36_01490) rpsL 291899..292306 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG36_RS01495 (MPG36_01495) rpsG 292322..292789 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG36_RS01500 (MPG36_01500) fusA 292801..294879 (+) 2079 WP_120869843.1 elongation factor G -
  MPG36_RS01505 (MPG36_01505) - 295418..295798 (+) 381 WP_001920034.1 hypothetical protein -
  MPG36_RS01510 (MPG36_01510) waaF 295987..297036 (-) 1050 WP_245017167.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG36_RS01515 (MPG36_01515) hisS 297098..298426 (+) 1329 WP_245017168.1 histidine--tRNA ligase -
  MPG36_RS01520 (MPG36_01520) asd 298413..299453 (+) 1041 WP_180589486.1 aspartate-semialdehyde dehydrogenase -
  MPG36_RS01525 (MPG36_01525) - 299864..301030 (+) 1167 WP_245017169.1 DUF874 family protein -
  MPG36_RS01530 (MPG36_01530) - 301267..302010 (-) 744 WP_245017170.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39596.56 Da        Isoelectric Point: 10.0165

>NTDB_id=574829 MPG36_RS01510 WP_245017167.1 295987..297036(-) (waaF) [Helicobacter pylori strain Hpfe080]
MSVNTPKRMRILLRLPNWLGDGVMASSLFHTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMVAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAATLLEKGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLSFN
NAYNLCGKTSIEELIERIATLDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574829 MPG36_RS01510 WP_245017167.1 295987..297036(-) (waaF) [Helicobacter pylori strain Hpfe080]
ATGAGCGTAAATACGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTCACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGTATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGTTGCCCCTAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAATCTCCCCACTCACACCCCAAACACTCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTCGCTGCTACTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTACTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361