Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG76_RS06050 Genome accession   NZ_CP094098
Coordinates   1290563..1291612 (+) Length   349 a.a.
NCBI ID   WP_245038144.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe081     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285563..1296612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG76_RS06030 (MPG76_06030) - 1285632..1286375 (+) 744 WP_002203616.1 carbonic anhydrase -
  MPG76_RS06035 (MPG76_06035) - 1286605..1287717 (-) 1113 WP_245038132.1 DUF874 family protein -
  MPG76_RS06040 (MPG76_06040) asd 1288146..1289186 (-) 1041 WP_245038142.1 aspartate-semialdehyde dehydrogenase -
  MPG76_RS06045 (MPG76_06045) hisS 1289173..1290501 (-) 1329 WP_180471446.1 histidine--tRNA ligase -
  MPG76_RS06050 (MPG76_06050) waaF 1290563..1291612 (+) 1050 WP_245038144.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG76_RS06055 (MPG76_06055) - 1291811..1292029 (-) 219 WP_000744170.1 hypothetical protein -
  MPG76_RS06060 (MPG76_06060) fusA 1292573..1294651 (-) 2079 WP_000101843.1 elongation factor G -
  MPG76_RS06065 (MPG76_06065) rpsG 1294663..1295130 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG76_RS06070 (MPG76_06070) rpsL 1295146..1295553 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39566.44 Da        Isoelectric Point: 9.9389

>NTDB_id=574814 MPG76_RS06050 WP_245038144.1 1290563..1291612(+) (waaF) [Helicobacter pylori strain Hpfe081]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKRHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAKVSATLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERTATLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574814 MPG76_RS06050 WP_245038144.1 1290563..1291612(+) (waaF) [Helicobacter pylori strain Hpfe081]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACGCCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCGCAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTAAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCACCGCTACTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361