Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG69_RS05400 Genome accession   NZ_CP094096
Coordinates   1139624..1140859 (+) Length   411 a.a.
NCBI ID   WP_245055303.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe082     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1134624..1145859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS05385 (MPG69_05385) - 1135036..1136970 (+) 1935 WP_245056774.1 type IA DNA topoisomerase -
  MPG69_RS05390 (MPG69_05390) - 1137100..1138086 (+) 987 WP_245055299.1 VirB8/TrbF family protein -
  MPG69_RS05395 (MPG69_05395) - 1138086..1139627 (+) 1542 WP_245055301.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG69_RS05400 (MPG69_05400) comB10 1139624..1140859 (+) 1236 WP_245055303.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG69_RS05405 (MPG69_05405) - 1140929..1141222 (+) 294 WP_000671329.1 hypothetical protein -
  MPG69_RS05410 (MPG69_05410) - 1141215..1141478 (+) 264 WP_245055306.1 hypothetical protein -
  MPG69_RS05415 (MPG69_05415) - 1141475..1141774 (+) 300 WP_245055309.1 hypothetical protein -
  MPG69_RS05420 (MPG69_05420) - 1141774..1142715 (+) 942 WP_245055312.1 ATPase, T2SS/T4P/T4SS family -
  MPG69_RS05425 (MPG69_05425) - 1142712..1143167 (+) 456 WP_245055314.1 mobilization protein -
  MPG69_RS05430 (MPG69_05430) - 1143164..1143454 (+) 291 WP_000159828.1 hypothetical protein -
  MPG69_RS05435 (MPG69_05435) - 1143455..1144012 (+) 558 WP_245055316.1 hypothetical protein -
  MPG69_RS05440 (MPG69_05440) - 1144013..1145740 (+) 1728 WP_245055318.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46398.54 Da        Isoelectric Point: 10.0905

>NTDB_id=574766 MPG69_RS05400 WP_245055303.1 1139624..1140859(+) (comB10) [Helicobacter pylori strain Hpfe082]
MKKLLLLLEHKIIKIGLIIVIVLVGFFLFYKQEVTEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPISIKNSVSNTKSK
EKQELKKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIVTIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNDDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=574766 MPG69_RS05400 WP_245055303.1 1139624..1140859(+) (comB10) [Helicobacter pylori strain Hpfe082]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTTGGTTTTTT
TCTTTTTTACAAACAAGAAGTCACAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGTCAAAAAGAAACACAGCCTCCAATCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTAAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAAATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTGAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAACCCATTGTCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAACAAAACGATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.483

70.56

0.384