Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KKI45_RS04865 Genome accession   NZ_CP076343
Coordinates   843579..845384 (+) Length   601 a.a.
NCBI ID   WP_011668201.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain SPC-SNU 70-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 838579..850384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKI45_RS04840 (KKI45_04840) - 838768..839502 (+) 735 WP_011668206.1 ABC transporter ATP-binding protein -
  KKI45_RS04845 (KKI45_04845) - 839499..840725 (+) 1227 WP_011668205.1 ABC transporter permease -
  KKI45_RS04850 (KKI45_04850) - 840787..841578 (+) 792 WP_011668204.1 phosphotransferase family protein -
  KKI45_RS04855 (KKI45_04855) trmB 841644..842291 (+) 648 WP_011668203.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  KKI45_RS04860 (KKI45_04860) - 842418..843512 (+) 1095 WP_060416635.1 competence protein CoiA -
  KKI45_RS04865 (KKI45_04865) pepF 843579..845384 (+) 1806 WP_011668201.1 oligoendopeptidase F Regulator
  KKI45_RS04870 (KKI45_04870) - 845443..846306 (-) 864 WP_011668200.1 DegV family protein -
  KKI45_RS04875 (KKI45_04875) - 846469..847107 (-) 639 WP_011668199.1 ClpXP adapter SpxH family protein -
  KKI45_RS04880 (KKI45_04880) - 847421..848080 (+) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  KKI45_RS04885 (KKI45_04885) - 848082..848885 (+) 804 WP_011668197.1 NAD kinase -
  KKI45_RS04890 (KKI45_04890) - 848882..849781 (+) 900 WP_011668196.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67149.17 Da        Isoelectric Point: 4.8300

>NTDB_id=574752 KKI45_RS04865 WP_011668201.1 843579..845384(+) (pepF) [Levilactobacillus brevis strain SPC-SNU 70-2]
MKQIPKRSEVPTALTWDLTTIFPDEAAFKAAIAAIKTQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNDPRLADYQHVFDVLGQQRAHTLSVAEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNDHLDSLHRYVNLRKEILDLPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAHELK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=574752 KKI45_RS04865 WP_011668201.1 843579..845384(+) (pepF) [Levilactobacillus brevis strain SPC-SNU 70-2]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCACGGCACTGACTTGGGACCTGACAACTATTTTTCCCGACGAGGCAGC
TTTTAAGGCCGCAATTGCTGCAATTAAAACGCAAACAACGGTCGTGGCCGGTTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATATGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCAGCCCAGGCATTAATGGGGCAGGCCGAGAGCTTGGTGGCAACTGTGGGTGCCGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGTTGATTGATAACGACCCCCGGCTAG
CAGATTATCAGCATGTGTTTGACGTATTGGGCCAGCAGCGGGCACATACGCTGTCAGTGGCGGAAGAAAAATTGCTAGCG
GGTGCTAGTGATATCTTTGGTGCATCTGCTAAAACTTACAGCGTGCTGAGTGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGACGAAGCCGGCAATGATGTGCGACTGTCAGAAGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCTTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCTGCAACCTTAGCGAGCGAAGTCAAA
ACGCATAATTTTAGTGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCAGCGATGAGTCGCAACAATGTGCCAGCGGT
GGTCTATGATACCTTGGTGGAAACAGTCAATGATCATTTAGACTCACTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGACTTGCCACAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTCTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGTCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAGCGAACGGGCGCTTACTCAGGCGGGATGTATGATACCAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTATGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTTGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACA
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGCGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGTTTGGCAGAATTCACGCAATTGGCGCATGAATTAAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.831

98.17

0.489