Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG69_RS01510 Genome accession   NZ_CP094096
Coordinates   294936..295985 (-) Length   349 a.a.
NCBI ID   WP_245056157.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe082     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 289936..300985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG69_RS01490 (MPG69_01490) rpsL 290994..291401 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG69_RS01495 (MPG69_01495) rpsG 291417..291884 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG69_RS01500 (MPG69_01500) fusA 291896..293974 (+) 2079 WP_015429323.1 elongation factor G -
  MPG69_RS01505 (MPG69_01505) - 294513..294731 (+) 219 WP_000744171.1 hypothetical protein -
  MPG69_RS01510 (MPG69_01510) waaF 294936..295985 (-) 1050 WP_245056157.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG69_RS01515 (MPG69_01515) hisS 296047..297375 (+) 1329 WP_245056159.1 histidine--tRNA ligase -
  MPG69_RS01520 (MPG69_01520) asd 297362..298402 (+) 1041 WP_245056162.1 aspartate-semialdehyde dehydrogenase -
  MPG69_RS01525 (MPG69_01525) - 298838..300034 (+) 1197 WP_245056164.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39675.61 Da        Isoelectric Point: 9.8130

>NTDB_id=574749 MPG69_RS01510 WP_245056157.1 294936..295985(-) (waaF) [Helicobacter pylori strain Hpfe082]
MSANAPKRMRILLRLPNWLGDGVMASPLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPTSYYAEVSATLLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574749 MPG69_RS01510 WP_245056157.1 294936..295985(-) (waaF) [Helicobacter pylori strain Hpfe082]
ATGAGTGCAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTTAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAACTTCTTATTACGCTGAAGTTTCTGCTACTCTATTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTCTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTGTTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCTTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361