Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG47_RS05305 Genome accession   NZ_CP094095
Coordinates   1111012..1112937 (+) Length   641 a.a.
NCBI ID   WP_245015911.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe083     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106012..1117937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG47_RS05280 (MPG47_05280) hofB 1106210..1107649 (-) 1440 WP_245015907.1 outer membrane beta-barrel protein HofB -
  MPG47_RS05285 (MPG47_05285) pyrB 1107945..1108868 (-) 924 WP_245015908.1 aspartate carbamoyltransferase -
  MPG47_RS05290 (MPG47_05290) - 1108935..1109450 (+) 516 WP_000523561.1 hypothetical protein -
  MPG47_RS05295 (MPG47_05295) - 1109450..1110157 (+) 708 WP_245015909.1 TlyA family RNA methyltransferase -
  MPG47_RS05300 (MPG47_05300) - 1110123..1110965 (+) 843 WP_245015910.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG47_RS05305 (MPG47_05305) recP/tkt 1111012..1112937 (+) 1926 WP_245015911.1 transketolase Machinery gene
  MPG47_RS05310 (MPG47_05310) - 1112934..1115270 (+) 2337 WP_245015912.1 PD-(D/E)XK nuclease family protein -
  MPG47_RS05315 (MPG47_05315) - 1115267..1117783 (+) 2517 WP_245015913.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70454.64 Da        Isoelectric Point: 6.5396

>NTDB_id=574725 MPG47_RS05305 WP_245015911.1 1111012..1112937(+) (recP/tkt) [Helicobacter pylori strain Hpfe083]
MQLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEHVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKEKVLKGAYVKYDAKNPAITLVASGSEVSLALESAKMLERENIPT
QVVSTPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=574725 MPG47_RS05305 WP_245015911.1 1111012..1112937(+) (recP/tkt) [Helicobacter pylori strain Hpfe083]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGTGCGGACATGATAGA
TAGGGCCAATAGCGGGCATCCGGGCGTGTGCTTGGGACTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACTAACCCTAAATGGCTTAATAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCATATAGTTTA
TTGCATTTGTGGGGTTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGTGCTTCTTTAGCCGGACATCTCAACCTGAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGTGCTATTAATATTAGTTTTAGCGAGCATGTCAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACAATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCTTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTGAAGGATTTTGATTTTAGTGCCATTAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCAT
CCAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCAGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCCACGCACCAACCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGTAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGAAGGTTTTAAAAGGGGCGTATGTTAAATACGATGCTAAAAATCCCGCTA
TCACGCTGGTTGCGAGCGGGAGTGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCACGCCATGCTTTGATTTATTGATAGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTGATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.321

100

0.42