Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF97_RS05430 Genome accession   NZ_CP094093
Coordinates   1146772..1147176 (-) Length   134 a.a.
NCBI ID   WP_245102075.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1141772..1152176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF97_RS05390 (MPF97_05390) - 1142694..1143479 (-) 786 WP_245102063.1 hypothetical protein -
  MPF97_RS05395 (MPF97_05395) - 1143479..1143865 (-) 387 WP_245102065.1 DUF1294 domain-containing protein -
  MPF97_RS07550 - 1143945..1144076 (-) 132 WP_280635885.1 hypothetical protein -
  MPF97_RS05400 (MPF97_05400) - 1144201..1144362 (-) 162 WP_014536434.1 lysozyme -
  MPF97_RS05405 (MPF97_05405) - 1144382..1144528 (-) 147 WP_245102067.1 hypothetical protein -
  MPF97_RS05410 (MPF97_05410) - 1144552..1144875 (-) 324 WP_245102069.1 lysozyme -
  MPF97_RS05415 (MPF97_05415) - 1144886..1145446 (-) 561 WP_245102071.1 hypothetical protein -
  MPF97_RS05420 (MPF97_05420) - 1145430..1145768 (-) 339 WP_000699911.1 hypothetical protein -
  MPF97_RS05425 (MPF97_05425) - 1145958..1146644 (-) 687 WP_245102073.1 tetratricopeptide repeat protein -
  MPF97_RS05430 (MPF97_05430) dprB 1146772..1147176 (-) 405 WP_245102075.1 Holliday junction resolvase RuvX Machinery gene
  MPF97_RS05435 (MPF97_05435) dprA 1147173..1147973 (-) 801 WP_245102077.1 DNA-processing protein DprA Machinery gene
  MPF97_RS05440 (MPF97_05440) minE 1147985..1148218 (-) 234 WP_021304603.1 cell division topological specificity factor MinE -
  MPF97_RS05445 (MPF97_05445) minD 1148215..1149021 (-) 807 WP_024116666.1 septum site-determining protein MinD -
  MPF97_RS05450 (MPF97_05450) ilvC 1149045..1150037 (-) 993 WP_245102078.1 ketol-acid reductoisomerase -
  MPF97_RS05460 (MPF97_05460) - 1150286..1151068 (+) 783 WP_245102079.1 NAD+ synthase -
  MPF97_RS05465 (MPF97_05465) - 1151065..1152003 (+) 939 WP_245102080.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15257.74 Da        Isoelectric Point: 8.7002

>NTDB_id=574642 MPF97_RS05430 WP_245102075.1 1146772..1147176(-) (dprB) [Helicobacter pylori strain Hpfe085]
MILACDVGLKRIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFNGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=574642 MPF97_RS05430 WP_245102075.1 1146772..1147176(-) (dprB) [Helicobacter pylori strain Hpfe085]
GTGATTTTGGCATGCGATGTGGGCTTAAAACGCATTGGGATCGCTATGCTTTTGAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAATGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGTATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

92.537

100

0.925