Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KNN08_RS02950 Genome accession   NZ_CP076318
Coordinates   286103..286732 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Survcare045     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 281103..291732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN08_RS02930 (KNN08_02930) ycbZ 281504..283264 (-) 1761 WP_000152888.1 Lon protease family protein -
  KNN08_RS02935 (KNN08_02935) matP 283450..283902 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KNN08_RS02940 (KNN08_02940) ompA 283978..285018 (-) 1041 WP_000750416.1 porin OmpA -
  KNN08_RS02945 (KNN08_02945) sulA 285375..285884 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KNN08_RS02950 (KNN08_02950) sxy/tfoX 286103..286732 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KNN08_RS02955 (KNN08_02955) yccS 286695..288857 (-) 2163 WP_000875058.1 YccS family putative transporter -
  KNN08_RS02960 (KNN08_02960) yccF 288867..289313 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KNN08_RS02965 (KNN08_02965) helD 289436..291490 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=574638 KNN08_RS02950 WP_000839153.1 286103..286732(+) (sxy/tfoX) [Escherichia coli strain Survcare045]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=574638 KNN08_RS02950 WP_000839153.1 286103..286732(+) (sxy/tfoX) [Escherichia coli strain Survcare045]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1