Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPF97_RS01520 Genome accession   NZ_CP094093
Coordinates   296377..297426 (-) Length   349 a.a.
NCBI ID   WP_245102746.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe085     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 291377..302426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF97_RS01495 (MPF97_01495) rpsL 292487..292894 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPF97_RS01500 (MPF97_01500) rpsG 292910..293377 (+) 468 WP_212884542.1 30S ribosomal protein S7 -
  MPF97_RS01505 (MPF97_01505) fusA 293389..295467 (+) 2079 WP_245102744.1 elongation factor G -
  MPF97_RS01510 (MPF97_01510) - 295705..295917 (-) 213 WP_058054591.1 hypothetical protein -
  MPF97_RS01515 (MPF97_01515) - 296009..296173 (+) 165 WP_000744176.1 hypothetical protein -
  MPF97_RS01520 (MPF97_01520) waaF 296377..297426 (-) 1050 WP_245102746.1 lipopolysaccharide heptosyltransferase II Regulator
  MPF97_RS01525 (MPF97_01525) hisS 297488..298816 (+) 1329 WP_245102749.1 histidine--tRNA ligase -
  MPF97_RS01530 (MPF97_01530) asd 298803..299843 (+) 1041 WP_245102751.1 aspartate-semialdehyde dehydrogenase -
  MPF97_RS01535 (MPF97_01535) - 300254..301450 (+) 1197 WP_245102753.1 DUF874 family protein -
  MPF97_RS01540 (MPF97_01540) - 301681..302424 (-) 744 WP_002203616.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39612.52 Da        Isoelectric Point: 9.7445

>NTDB_id=574627 MPF97_RS01520 WP_245102746.1 296377..297426(-) (waaF) [Helicobacter pylori strain Hpfe085]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMICELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPTSYYAEVAATLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574627 MPF97_RS01520 WP_245102746.1 296377..297426(-) (waaF) [Helicobacter pylori strain Hpfe085]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTACCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTATCTTAGTGGGCCCACAAATGATTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAACTTCTTATTACGCTGAAGTCGCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGAAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCCATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCATTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCTTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAACCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361