Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KNN07_RS07735 Genome accession   NZ_CP076305
Coordinates   1606754..1607383 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Survcare253     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601754..1612383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN07_RS07715 (KNN07_07715) ycbZ 1602143..1603903 (-) 1761 WP_000156526.1 Lon protease family protein -
  KNN07_RS07720 (KNN07_07720) matP 1604089..1604541 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KNN07_RS07725 (KNN07_07725) ompA 1604617..1605669 (-) 1053 WP_001361736.1 porin OmpA -
  KNN07_RS07730 (KNN07_07730) sulA 1606026..1606535 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KNN07_RS07735 (KNN07_07735) sxy/tfoX 1606754..1607383 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KNN07_RS07740 (KNN07_07740) yccS 1607346..1609508 (-) 2163 WP_143190626.1 YccS family putative transporter -
  KNN07_RS07745 (KNN07_07745) yccF 1609518..1609964 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KNN07_RS07750 (KNN07_07750) helD 1610087..1612141 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=574620 KNN07_RS07735 WP_000839153.1 1606754..1607383(+) (sxy/tfoX) [Escherichia coli strain Survcare253]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=574620 KNN07_RS07735 WP_000839153.1 1606754..1607383(+) (sxy/tfoX) [Escherichia coli strain Survcare253]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1