Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG82_RS01535 Genome accession   NZ_CP094092
Coordinates   300246..301295 (-) Length   349 a.a.
NCBI ID   WP_245082979.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe086     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 295246..306295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS01515 (MPG82_01515) rpsL 296287..296694 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG82_RS01520 (MPG82_01520) rpsG 296710..297177 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG82_RS01525 (MPG82_01525) fusA 297189..299267 (+) 2079 WP_245082976.1 elongation factor G -
  MPG82_RS01530 (MPG82_01530) - 299785..300057 (+) 273 WP_000744165.1 hypothetical protein -
  MPG82_RS01535 (MPG82_01535) waaF 300246..301295 (-) 1050 WP_245082979.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG82_RS01540 (MPG82_01540) hisS 301356..302684 (+) 1329 WP_245082982.1 histidine--tRNA ligase -
  MPG82_RS01545 (MPG82_01545) asd 302671..303711 (+) 1041 WP_245082985.1 aspartate-semialdehyde dehydrogenase -
  MPG82_RS01550 (MPG82_01550) - 304138..305340 (+) 1203 WP_245082988.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39572.46 Da        Isoelectric Point: 9.3691

>NTDB_id=574587 MPG82_RS01535 WP_245082979.1 300246..301295(-) (waaF) [Helicobacter pylori strain Hpfe086]
MSVNAPKRMRILLRLPNWLGDGVMASPLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDKKSILPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLSFN
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574587 MPG82_RS01535 WP_245082979.1 300246..301295(-) (waaF) [Helicobacter pylori strain Hpfe086]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACTCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGTCATGCGATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCATTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
TGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCCATCTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGTGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367