Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPF86_RS05280 Genome accession   NZ_CP094091
Coordinates   1100322..1102247 (+) Length   641 a.a.
NCBI ID   WP_245063760.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1095322..1107247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF86_RS05255 (MPF86_05255) pyrB 1097035..1097958 (-) 924 WP_245063756.1 aspartate carbamoyltransferase -
  MPF86_RS05260 (MPF86_05260) - 1098005..1098178 (-) 174 Protein_1021 aspartate carbamoyltransferase -
  MPF86_RS05265 (MPF86_05265) - 1098245..1098760 (+) 516 WP_000523553.1 hypothetical protein -
  MPF86_RS05270 (MPF86_05270) - 1098760..1099467 (+) 708 WP_245063757.1 TlyA family RNA methyltransferase -
  MPF86_RS05275 (MPF86_05275) - 1099433..1100275 (+) 843 WP_180506563.1 bifunctional riboflavin kinase/FAD synthetase -
  MPF86_RS05280 (MPF86_05280) recP/tkt 1100322..1102247 (+) 1926 WP_245063760.1 transketolase Machinery gene
  MPF86_RS05285 (MPF86_05285) - 1102244..1104580 (+) 2337 WP_245063768.1 PD-(D/E)XK nuclease family protein -
  MPF86_RS05290 (MPF86_05290) - 1104577..1107105 (+) 2529 WP_245065291.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70508.79 Da        Isoelectric Point: 6.6687

>NTDB_id=574563 MPF86_RS05280 WP_245063760.1 1100322..1102247(+) (recP/tkt) [Helicobacter pylori strain Hpfe088]
MQLSNADLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLGKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEHVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLNPKTKE
KIHVLKGFDFNTIHYPAFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQAALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALESAKMLERENIPT
QVVSVPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSIENITIQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=574563 MPF86_RS05280 WP_245063760.1 1100322..1102247(+) (recP/tkt) [Helicobacter pylori strain Hpfe088]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGCGCGGACATGATAGA
TAGGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAATAGGGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACTGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGGCAAAGAAGCTATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGTGCTATTAATATTAGTTTCAGCGAGCATGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCTTTATGGGAAAAATCCTTAAACCCTAAAACAAAAGAA
AAGATTCATGTGTTAAAGGGTTTTGATTTTAACACCATCCATTACCCCGCCTTTAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGATTTTTAGGAGGGAGCGCGGATTTAGCCCCAT
CCAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCAGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCCAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCCACGCACCAGCCTATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTACGCTTTCAGACCTAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGCAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACGCTGGTTGCGAGCGGGAGTGAAGTCTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGTGCCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAACTTTTTAAAGGTAAAGT
TTTAGTCATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CAGCAAAGGGTGATAAACTCTTTGAAAAATTTGGTTTCAGCATTGAAAACATCACCATTCAAGCTAAAAGGTTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-319)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418