Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPF86_RS01530 Genome accession   NZ_CP094091
Coordinates   297458..298507 (-) Length   349 a.a.
NCBI ID   WP_245064681.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe088     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 292458..303507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF86_RS01510 (MPF86_01510) rpsL 293217..293624 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPF86_RS01515 (MPF86_01515) rpsG 293640..294107 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPF86_RS01520 (MPF86_01520) fusA 294119..296197 (+) 2079 WP_245064679.1 elongation factor G -
  MPF86_RS01525 (MPF86_01525) - 296944..297270 (+) 327 WP_000744162.1 hypothetical protein -
  MPF86_RS01530 (MPF86_01530) waaF 297458..298507 (-) 1050 WP_245064681.1 lipopolysaccharide heptosyltransferase II Regulator
  MPF86_RS01535 (MPF86_01535) hisS 298569..299897 (+) 1329 WP_245064683.1 histidine--tRNA ligase -
  MPF86_RS01540 (MPF86_01540) asd 299884..300924 (+) 1041 WP_245064685.1 aspartate-semialdehyde dehydrogenase -
  MPF86_RS01545 (MPF86_01545) - 301356..302477 (+) 1122 Protein_296 DUF874 family protein -
  MPF86_RS01550 (MPF86_01550) - 302713..303456 (-) 744 WP_002205282.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39648.55 Da        Isoelectric Point: 9.7693

>NTDB_id=574547 MPF86_RS01530 WP_245064681.1 297458..298507(-) (waaF) [Helicobacter pylori strain Hpfe088]
MSVNVPKRMRILLRLPNWLGDGVMASSLFHTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNFPTHIPNTPKKIGFNPSASYGSAKRWPASYYAEVSAILLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIATLDLFITNDSGPMHVAAGTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574547 MPF86_RS01530 WP_245064681.1 297458..298507(-) (waaF) [Helicobacter pylori strain Hpfe088]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTCACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAGATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCAATAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACTTCCCCACTCACATCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTGGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361