Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPF90_RS03595 Genome accession   NZ_CP094090
Coordinates   761149..762384 (-) Length   411 a.a.
NCBI ID   WP_245023383.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe089     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756149..767384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF90_RS03555 (MPF90_03555) - 756269..758001 (-) 1733 Protein_685 type IV secretory system conjugative DNA transfer family protein -
  MPF90_RS03560 (MPF90_03560) - 757995..758551 (-) 557 Protein_686 hypothetical protein -
  MPF90_RS03565 (MPF90_03565) - 758552..758843 (-) 292 Protein_687 hypothetical protein -
  MPF90_RS03570 (MPF90_03570) - 758840..759295 (-) 456 WP_245023382.1 mobilization protein -
  MPF90_RS03575 (MPF90_03575) - 759292..760233 (-) 942 WP_015086303.1 ATPase, T2SS/T4P/T4SS family -
  MPF90_RS03580 (MPF90_03580) - 760233..760532 (-) 300 WP_000660135.1 hypothetical protein -
  MPF90_RS03585 (MPF90_03585) - 760529..760793 (-) 265 Protein_691 hypothetical protein -
  MPF90_RS03590 (MPF90_03590) - 760786..761079 (-) 294 WP_000671329.1 hypothetical protein -
  MPF90_RS03595 (MPF90_03595) comB10 761149..762384 (-) 1236 WP_245023383.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF90_RS03600 (MPF90_03600) - 762381..763922 (-) 1542 WP_245023384.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPF90_RS03605 (MPF90_03605) - 763922..764908 (-) 987 WP_245023385.1 VirB8/TrbF family protein -
  MPF90_RS07815 - 764910..765038 (-) 129 WP_280635639.1 hypothetical protein -
  MPF90_RS03610 (MPF90_03610) - 765038..766969 (-) 1932 WP_245023425.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46400.38 Da        Isoelectric Point: 9.7715

>NTDB_id=574511 MPF90_RS03595 WP_245023383.1 761149..762384(-) (comB10) [Helicobacter pylori strain Hpfe089]
MKKLLLLLDHKIIKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPEDFNKTLIKPQNPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKIKNAASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNDIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEILAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=574511 MPF90_RS03595 WP_245023383.1 761149..762384(-) (comB10) [Helicobacter pylori strain Hpfe089]
ATGAAAAAACTTCTTTTACTTTTAGATCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGTGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGACTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTGAGGATTTTAA
TAAAACGCTTATTAAACCACAAAATCCATCCTTCAACTACAACACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAATAAAAAATGCAGCGAGTAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATTCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTGGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGATTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGCCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATGATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCCAAAAACAATGAAATCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

45.34

96.594

0.438