Detailed information
Overview
| Name | recU | Type | Machinery gene |
| Locus tag | KM776_RS11820 | Genome accession | NZ_CP076290 |
| Coordinates | 2391367..2391975 (+) | Length | 202 a.a. |
| NCBI ID | WP_003153521.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain Q12 | ||
| Function | plasmid transformation; homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2386367..2396975
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KM776_RS11780 (KM776_11780) | - | 2387420..2387926 (-) | 507 | WP_003153536.1 | PTS glucose transporter subunit IIA | - |
| KM776_RS11785 (KM776_11785) | - | 2388065..2388478 (+) | 414 | WP_003153535.1 | hypothetical protein | - |
| KM776_RS11790 (KM776_11790) | - | 2388508..2388942 (-) | 435 | WP_003153534.1 | YppG family protein | - |
| KM776_RS11795 (KM776_11795) | - | 2389129..2389311 (+) | 183 | WP_003153532.1 | YppF family protein | - |
| KM776_RS11800 (KM776_11800) | - | 2389350..2389718 (-) | 369 | WP_003153529.1 | YppE family protein | - |
| KM776_RS11805 (KM776_11805) | - | 2389764..2390009 (-) | 246 | WP_003153527.1 | DUF5446 family protein | - |
| KM776_RS11810 (KM776_11810) | sspM | 2390215..2390319 (+) | 105 | WP_003153525.1 | acid-soluble spore protein SspM | - |
| KM776_RS11815 (KM776_11815) | - | 2390363..2391325 (-) | 963 | WP_014305287.1 | DUF2515 domain-containing protein | - |
| KM776_RS11820 (KM776_11820) | recU | 2391367..2391975 (+) | 609 | WP_003153521.1 | Holliday junction resolvase RecU | Machinery gene |
| KM776_RS11825 (KM776_11825) | - | 2392014..2394797 (+) | 2784 | WP_131258823.1 | PBP1A family penicillin-binding protein | - |
| KM776_RS11830 (KM776_11830) | - | 2394874..2395365 (-) | 492 | WP_014305289.1 | YpoC family protein | - |
| KM776_RS11835 (KM776_11835) | nth | 2395362..2396021 (-) | 660 | WP_043867236.1 | endonuclease III | - |
| KM776_RS11840 (KM776_11840) | dnaD | 2396040..2396738 (-) | 699 | WP_003153516.1 | DNA replication protein DnaD | - |
Sequence
Protein
Download Length: 202 a.a. Molecular weight: 23680.82 Da Isoelectric Point: 9.6872
>NTDB_id=574466 KM776_RS11820 WP_003153521.1 2391367..2391975(+) (recU) [Bacillus velezensis strain Q12]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ
Nucleotide
Download Length: 609 bp
>NTDB_id=574466 KM776_RS11820 WP_003153521.1 2391367..2391975(+) (recU) [Bacillus velezensis strain Q12]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACTGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACTGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recU | Bacillus subtilis subsp. subtilis str. 168 |
90.955 |
98.515 |
0.896 |