Detailed information    

insolico Bioinformatically predicted

Overview


Name   recU   Type   Machinery gene
Locus tag   KM776_RS11820 Genome accession   NZ_CP076290
Coordinates   2391367..2391975 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain Q12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2386367..2396975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM776_RS11780 (KM776_11780) - 2387420..2387926 (-) 507 WP_003153536.1 PTS glucose transporter subunit IIA -
  KM776_RS11785 (KM776_11785) - 2388065..2388478 (+) 414 WP_003153535.1 hypothetical protein -
  KM776_RS11790 (KM776_11790) - 2388508..2388942 (-) 435 WP_003153534.1 YppG family protein -
  KM776_RS11795 (KM776_11795) - 2389129..2389311 (+) 183 WP_003153532.1 YppF family protein -
  KM776_RS11800 (KM776_11800) - 2389350..2389718 (-) 369 WP_003153529.1 YppE family protein -
  KM776_RS11805 (KM776_11805) - 2389764..2390009 (-) 246 WP_003153527.1 DUF5446 family protein -
  KM776_RS11810 (KM776_11810) sspM 2390215..2390319 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  KM776_RS11815 (KM776_11815) - 2390363..2391325 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  KM776_RS11820 (KM776_11820) recU 2391367..2391975 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  KM776_RS11825 (KM776_11825) - 2392014..2394797 (+) 2784 WP_131258823.1 PBP1A family penicillin-binding protein -
  KM776_RS11830 (KM776_11830) - 2394874..2395365 (-) 492 WP_014305289.1 YpoC family protein -
  KM776_RS11835 (KM776_11835) nth 2395362..2396021 (-) 660 WP_043867236.1 endonuclease III -
  KM776_RS11840 (KM776_11840) dnaD 2396040..2396738 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence


Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=574466 KM776_RS11820 WP_003153521.1 2391367..2391975(+) (recU) [Bacillus velezensis strain Q12]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=574466 KM776_RS11820 WP_003153521.1 2391367..2391975(+) (recU) [Bacillus velezensis strain Q12]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACTGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains


Predicted by InterproScan.

(31-193)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896