Detailed information NTG0574460

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG40_RS00795
• Genome accession: NZ_CP094088
• Coordinates: 173218..174417 (-)
• Length: 399 a.a.
• NCBI ID: WP_245063898.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe092
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 168218..179417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG40_RS00770 (MPG40_00770)	-	168229..168747 (-)	519	WP_245063891.1	replication regulatory RepB family protein	-
MPG40_RS00775 (MPG40_00775)	-	168744..169688 (-)	945	WP_075668013.1	CpaF/VirB11 family protein	-
MPG40_RS00780 (MPG40_00780)	-	169693..169965 (-)	273	WP_245063893.1	hypothetical protein	-
MPG40_RS00785 (MPG40_00785)	-	169983..170960 (-)	978	WP_245063894.1	hypothetical protein	-
MPG40_RS00790 (MPG40_00790)	-	170973..173234 (-)	2262	WP_245063896.1	collagen-like protein	-
MPG40_RS00795 (MPG40_00795)	comB10	173218..174417 (-)	1200	WP_245063898.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG40_RS00800 (MPG40_00800)	-	174414..176081 (-)	1668	WP_245063899.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG40_RS00805 (MPG40_00805)	-	176078..177247 (-)	1170	WP_245063901.1	VirB8/TrbF family protein	-
MPG40_RS00810 (MPG40_00810)	-	177240..177374 (-)	135	WP_154409165.1	type IV secretion system protein VirB7	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44763.51 Da
• Isoelectric Point: 9.9468

>NTDB_id=574460 MPG40_RS00795 WP_245063898.1 173218..174417(-) (comB10) [Helicobacter pylori strain Hpfe092]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKYTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=574460 MPG40_RS00795 WP_245063898.1 173218..174417(-) (comB10) [Helicobacter pylori strain Hpfe092]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGTATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACGATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.672	98.496	0.519