Detailed information NTG0574411

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KM146_RS18460
• Genome accession: NZ_CP076287
• Coordinates: 2298203..2299189 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain ZJ-0
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2293203..2304189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KM146_RS18445 (KM146_18445)	recA	2293748..2294791 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
KM146_RS18450 (KM146_18450)	pncC	2294992..2295474 (-)	483	WP_065274846.1	nicotinamide-nucleotide amidase	-
KM146_RS18455 (KM146_18455)	mutS	2295559..2298120 (+)	2562	WP_065274847.1	DNA mismatch repair protein MutS	-
KM146_RS18460 (KM146_18460)	rpoS	2298203..2299189 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
KM146_RS18465 (KM146_18465)	-	2299270..2300193 (-)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
KM146_RS18470 (KM146_18470)	-	2300207..2300833 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KM146_RS18475 (KM146_18475)	surE	2300833..2301609 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
KM146_RS18480 (KM146_18480)	truD	2301609..2302652 (-)	1044	WP_065274848.1	tRNA pseudouridine(13) synthase TruD	-
KM146_RS18485 (KM146_18485)	ispF	2302698..2303174 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KM146_RS18490 (KM146_18490)	ispD	2303189..2303896 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KM146_RS18495 (KM146_18495)	ftsB	2303898..2304179 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=574411 KM146_RS18460 WP_005380887.1 2298203..2299189(-) (rpoS) [Vibrio alginolyticus strain ZJ-0]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=574411 KM146_RS18460 WP_005380887.1 2298203..2299189(-) (rpoS) [Vibrio alginolyticus strain ZJ-0]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854