Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KM146_RS18330 Genome accession   NZ_CP076287
Coordinates   2276035..2276553 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain ZJ-0     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271035..2281553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS18305 (KM146_18305) rimM 2271124..2271672 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  KM146_RS18310 (KM146_18310) rpsP 2271702..2271950 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  KM146_RS18315 (KM146_18315) ffh 2272160..2273542 (-) 1383 WP_005385423.1 signal recognition particle protein -
  KM146_RS18320 (KM146_18320) - 2273767..2274561 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  KM146_RS18325 (KM146_18325) - 2274686..2275966 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  KM146_RS18330 (KM146_18330) luxS 2276035..2276553 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  KM146_RS18335 (KM146_18335) - 2276638..2277243 (-) 606 WP_171343190.1 hypothetical protein -
  KM146_RS18340 (KM146_18340) gshA 2277267..2278835 (-) 1569 WP_065274842.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=574408 KM146_RS18330 WP_017820391.1 2276035..2276553(-) (luxS) [Vibrio alginolyticus strain ZJ-0]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=574408 KM146_RS18330 WP_017820391.1 2276035..2276553(-) (luxS) [Vibrio alginolyticus strain ZJ-0]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGTCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGACGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866