Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   KM146_RS04190 Genome accession   NZ_CP076286
Coordinates   953422..955467 (+) Length   681 a.a.
NCBI ID   WP_065275248.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZJ-0     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 948422..960467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS04170 (KM146_04160) dcuC 948680..950047 (-) 1368 WP_005376528.1 anaerobic C4-dicarboxylate transporter DcuC -
  KM146_RS04175 (KM146_04165) - 950407..951531 (-) 1125 WP_005376527.1 acyl-CoA desaturase -
  KM146_RS04180 (KM146_04170) - 951803..952351 (+) 549 WP_005376525.1 GNAT family N-acetyltransferase -
  KM146_RS04185 (KM146_04175) - 952441..953058 (-) 618 WP_054577832.1 HAD family hydrolase -
  KM146_RS04190 (KM146_04180) cqsS 953422..955467 (+) 2046 WP_065275248.1 response regulator Regulator
  KM146_RS04195 (KM146_04185) cqsA 955571..956752 (-) 1182 WP_017635350.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  KM146_RS04200 (KM146_04190) ylqF 957090..958034 (-) 945 WP_065275249.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78216.77 Da        Isoelectric Point: 5.2226

>NTDB_id=574386 KM146_RS04190 WP_065275248.1 953422..955467(+) (cqsS) [Vibrio alginolyticus strain ZJ-0]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWEFAFPQAYENLSLRLFCSLLFFGIIFRNRLSSTWRDYVPIYYQVTIT
LCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSILPNMKEAGKEQYVMSVEDVTLLREVSQDAMN
IIQSGNETIDLLLTSIDENRVSRSSFKKYSVHSVVEQAIESFSYKRATDRFAISLDARSEFEFLGSDTLLKYVMYNLFKN
AFHHRKSEDFHIHVSMISSERFNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPLTTSDTVTEIKNDLTKLKTILTVTSQDILVSKVTDISRFMGFDSTILDANQVLKKKEYEFEFDLIFIDLE
SLDPRANQLDRLESLLSFTEARIVYLFEHHPTQRARKAAYEPIWIETQAWLLNTKPTIERLLYDSSYVPTPTASVTLDNS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQEDVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=574386 KM146_RS04190 WP_065275248.1 953422..955467(+) (cqsS) [Vibrio alginolyticus strain ZJ-0]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCAAACCTAACTCTCGTTGGCTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTCTGGGAGTTTGCCTTTCCACAGGCTTATGAAAATTTATCTCTTAGATTGTTTTGCTCGTTATTGT
TTTTCGGCATCATTTTTAGAAACCGCTTATCATCGACTTGGAGAGATTATGTTCCTATTTACTACCAAGTGACGATAACG
CTGTGCTTACCGTTTTTCTTTTTTTATATGTTACTGATGAATGACTGGTCCAATGTATGGGTTATGTCGTTTATGTCTGC
AATTTTCTTACACATTTTACTGGTTCATGTTACTAGGGTCATGTTTGCTCAAACCTTTGCTGGGATAGGTTTAGCAACAT
TCTTCGCTTGGGTTGCAAAAGGGTTCCATCTTGACTTGACCATGGATTGGACTCATGTGCCAATCTTTCTGTTTATTTAT
GTCTTCGGTAATTTGTTCTATTTTCGTAACCAAGTTGAACATGAAGCGAAAGTCTCGCTGGCAAAATCATTCGGGGCAGG
GATCGCACATGAAATGCGTAACCCGTTGAGTGGGCTTTGCACTTCAATAGATGTTATCCAGTCGATCTTGCCCAACATGA
AAGAGGCAGGAAAAGAGCAGTACGTCATGAGTGTAGAGGATGTCACCTTATTACGTGAAGTGAGTCAGGATGCAATGAAC
ATTATCCAATCGGGTAATGAAACCATCGATTTATTGCTAACTTCGATTGATGAAAATCGAGTTTCTCGTTCTAGCTTCAA
AAAATATTCAGTTCACTCGGTCGTTGAACAGGCAATTGAAAGCTTCAGTTATAAACGTGCCACTGATCGGTTTGCCATAT
CGCTGGATGCGAGAAGTGAGTTTGAGTTTCTAGGTAGTGATACATTACTTAAATACGTTATGTATAACCTCTTCAAGAAT
GCCTTCCATCACCGTAAATCTGAAGATTTTCACATACATGTATCCATGATAAGTTCAGAACGCTTTAATCAAATTGTTGT
AACCGATAATGGTGCTGGCATTGCTCCTGATGTTCTACGCAATATCTTTCAAGACTTTTACACCACTGGCAAATCAGGAA
GTTATGGTTTGGGTCTACCGTTTTGTAAAAAAGTCATGCGTTCATTTGGGGGGAACATTGAGTGTCAATCTCAGTTAGGG
GAGTGGTCTCAATTTACGTTAACTTTCCCACTAACGACATCTGATACCGTTACTGAAATCAAAAACGATCTGACTAAACT
CAAAACCATTCTAACGGTGACTAGCCAAGATATCTTGGTGTCTAAAGTAACAGATATTAGCCGTTTTATGGGCTTTGACT
CGACGATTTTAGATGCCAACCAAGTACTCAAAAAGAAAGAGTACGAGTTCGAATTCGATCTGATTTTTATCGATCTTGAG
AGCTTAGATCCAAGAGCAAACCAATTGGATAGATTAGAATCTCTCTTGTCTTTCACTGAAGCACGCATAGTTTATCTTTT
TGAGCATCATCCGACTCAGAGAGCACGTAAGGCTGCATATGAACCTATTTGGATCGAAACGCAAGCCTGGTTATTGAATA
CTAAACCAACTATTGAGCGTCTCTTATATGATTCAAGCTATGTACCGACACCAACGGCCTCGGTGACGTTAGATAATTCA
AATAAGCGCACAATTATGGTCGTGGATGATAATGAATCTTTGCGTAAATTCACGGCAATGTTACTTGAAAAGCAAGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAGGCTCTGGATACACTAGAGCAAGAAGATGTTGATCTCATTCTGATGGATA
TCGAAATGCCAATTATGGATGGTGTAGAAGCGTCTAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCACATACAGGGGATAGTTCACCTGTCACGTTGGACAAAATTGGGTCTTCGGGTATGTCTGACTTCATCGTAAAACC
GGCGGATAAAAATCGTTTGTTCGATAAAATCGCAAACTGGATCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-412)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.927

100

0.502