Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   KM146_RS03050 Genome accession   NZ_CP076286
Coordinates   660414..661511 (+) Length   365 a.a.
NCBI ID   WP_005385634.1    Uniprot ID   A0AAW9BFR8
Organism   Vibrio alginolyticus strain ZJ-0     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 655414..666511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM146_RS03025 (KM146_03010) - 656728..658071 (-) 1344 WP_025767935.1 MATE family efflux transporter -
  KM146_RS03030 (KM146_03015) - 658193..658507 (-) 315 WP_005373603.1 DUF496 family protein -
  KM146_RS03035 (KM146_03020) - 658749..658952 (+) 204 WP_031777159.1 hypothetical protein -
  KM146_RS03040 (KM146_03025) - 659118..659768 (+) 651 WP_054576121.1 YceH family protein -
  KM146_RS03045 (KM146_03030) - 659765..660082 (+) 318 WP_053304534.1 GIY-YIG nuclease family protein -
  KM146_RS03050 (KM146_03035) luxP 660414..661511 (+) 1098 WP_005385634.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  KM146_RS03055 (KM146_03040) luxQ 661511..664087 (+) 2577 WP_065275181.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  KM146_RS03060 (KM146_03045) slyA 664383..664838 (+) 456 WP_017635177.1 transcriptional regulator SlyA -
  KM146_RS03065 (KM146_03050) - 664874..665932 (+) 1059 WP_065275182.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=574385 KM146_RS03050 WP_005385634.1 660414..661511(+) (luxP) [Vibrio alginolyticus strain ZJ-0]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=574385 KM146_RS03050 WP_005385634.1 660414..661511(+) (luxP) [Vibrio alginolyticus strain ZJ-0]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGACGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAGCTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644