Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPPMSS1_RS04500 Genome accession   NZ_AP017633
Coordinates   965999..967519 (-) Length   506 a.a.
NCBI ID   WP_077231961.1    Uniprot ID   -
Organism   Helicobacter pylori strain PMSS1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 960999..972519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPMSS1_RS04475 (HPATCC43504_RS04660) - 961427..961582 (-) 156 Protein_878 restriction endonuclease subunit S -
  HPPMSS1_RS04480 (HPATCC43504_RS04665) - 961750..962853 (-) 1104 WP_077231964.1 restriction endonuclease subunit S -
  HPPMSS1_RS04485 (HPATCC43504_RS04670) - 962841..963617 (-) 777 WP_077231963.1 CAAX protease -
  HPPMSS1_RS04490 (HPATCC43504_RS04675) - 963704..963874 (-) 171 WP_235004119.1 restriction endonuclease subunit M -
  HPPMSS1_RS04495 (HPATCC43504_RS04680) - 963914..965974 (-) 2061 WP_077231962.1 heavy metal translocating P-type ATPase -
  HPPMSS1_RS04500 (HPATCC43504_RS04685) comM 965999..967519 (-) 1521 WP_077231961.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPPMSS1_RS04505 (HPATCC43504_RS04690) def 967525..968049 (-) 525 WP_077231960.1 peptide deformylase -
  HPPMSS1_RS04510 (HPATCC43504_RS04695) clpP 968054..968641 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPPMSS1_RS04515 (HPATCC43504_RS04700) tig 968662..970017 (-) 1356 WP_077231959.1 trigger factor -
  HPPMSS1_RS04520 (HPATCC43504_RS04705) - 970127..970963 (-) 837 WP_077231958.1 outer membrane protein -
  HPPMSS1_RS04525 (HPATCC43504_RS04710) hpaA 970996..971778 (-) 783 WP_000646644.1 flagellar sheath lipoprotein HpaA -
  HPPMSS1_RS04530 (HPATCC43504_RS04715) moaC 971891..972367 (-) 477 WP_077231957.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57270.27 Da        Isoelectric Point: 8.0577

>NTDB_id=57436 HPPMSS1_RS04500 WP_077231961.1 965999..967519(-) (comM) [Helicobacter pylori strain PMSS1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAIERFNLSMRSVDKVKKVAR
TIADLNACEDIEKTHVLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=57436 HPPMSS1_RS04500 WP_077231961.1 965999..967519(-) (comM) [Helicobacter pylori strain PMSS1]
ATGATTAACACGATATTTTGCGCAACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAAGCAGCGGGTCCAGTCAGCCTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCTCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAA
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGATTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCTGGCGAAATCGCACTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCGACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAAAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATAGAACGATTTTGCCCTTTAAATTTTGAAG
CGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTGATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAAACTCATGTGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment