Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A7A19_RS05350 Genome accession   NZ_CP076279
Coordinates   1125155..1125784 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SA53-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120155..1130784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A19_RS05330 (A7A19_05300) ycbZ 1120556..1122316 (-) 1761 WP_000156526.1 Lon protease family protein -
  A7A19_RS05335 (A7A19_05305) matP 1122502..1122954 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A7A19_RS05340 (A7A19_05310) ompA 1123030..1124070 (-) 1041 WP_000750416.1 porin OmpA -
  A7A19_RS05345 (A7A19_05315) sulA 1124427..1124936 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A7A19_RS05350 (A7A19_05320) sxy/tfoX 1125155..1125784 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A7A19_RS05355 (A7A19_05325) yccS 1125747..1127909 (-) 2163 WP_000875015.1 YccS family putative transporter -
  A7A19_RS05360 (A7A19_05330) yccF 1127919..1128365 (-) 447 WP_001261235.1 YccF domain-containing protein -
  A7A19_RS05365 (A7A19_05335) helD 1128488..1130542 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=574321 A7A19_RS05350 WP_000839153.1 1125155..1125784(+) (sxy/tfoX) [Escherichia coli strain SA53-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=574321 A7A19_RS05350 WP_000839153.1 1125155..1125784(+) (sxy/tfoX) [Escherichia coli strain SA53-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1