Detailed information NTG0574313

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG63_RS03215
• Genome accession: NZ_CP094082
• Coordinates: 664283..665485 (+)
• Length: 400 a.a.
• NCBI ID: WP_245047915.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe097
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 659283..670485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG63_RS03200 (MPG63_03200)	-	661323..661457 (+)	135	WP_000738749.1	hypothetical protein	-
MPG63_RS03205 (MPG63_03205)	-	661450..662619 (+)	1170	WP_245047913.1	VirB8/TrbF family protein	-
MPG63_RS03210 (MPG63_03210)	-	662616..664286 (+)	1671	WP_180483174.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG63_RS03215 (MPG63_03215)	comB10	664283..665485 (+)	1203	WP_245047915.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG63_RS03220 (MPG63_03220)	-	665469..667670 (+)	2202	WP_245047917.1	collagen-like protein	-
MPG63_RS03225 (MPG63_03225)	-	667683..668659 (+)	977	Protein_618	hypothetical protein	-
MPG63_RS03230 (MPG63_03230)	-	668677..668949 (+)	273	WP_180498752.1	hypothetical protein	-
MPG63_RS03235 (MPG63_03235)	-	668954..669898 (+)	945	WP_245047919.1	CpaF/VirB11 family protein	-
MPG63_RS03240 (MPG63_03240)	-	669895..670413 (+)	519	WP_245047921.1	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44674.29 Da
• Isoelectric Point: 9.7403

>NTDB_id=574313 MPG63_RS03215 WP_245047915.1 664283..665485(+) (comB10) [Helicobacter pylori strain Hpfe097]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNSEEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKYTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNSDNQIGQYRLNIA
WTRIITPQGINIILTNARGADVKGYNGLIGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQILRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=574313 MPG63_RS03215 WP_245047915.1 664283..665485(+) (comB10) [Helicobacter pylori strain Hpfe097]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAGTGAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGTATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAGCGATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATACTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAATAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATACTAAGACAATACGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTCCTAGCGGAGTTTTTTAAAGAGAAAAAACCGCTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.163	98.25	0.513