Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPPMSS1_RS01600 Genome accession   NZ_AP017633
Coordinates   322010..323059 (-) Length   349 a.a.
NCBI ID   WP_077232351.1    Uniprot ID   -
Organism   Helicobacter pylori strain PMSS1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 317010..328059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPMSS1_RS01580 (HPATCC43504_RS01625) rpsG 317167..317634 (+) 468 WP_001254355.1 30S ribosomal protein S7 -
  HPPMSS1_RS01585 (HPATCC43504_RS01630) fusA 317646..319724 (+) 2079 WP_077232354.1 elongation factor G -
  HPPMSS1_RS01590 (HPATCC43504_RS01635) - 320262..321251 (-) 990 WP_077232353.1 aldo/keto reductase -
  HPPMSS1_RS01595 (HPATCC43504_RS01645) - 321483..321818 (+) 336 WP_077232352.1 flagellar protein -
  HPPMSS1_RS01600 (HPATCC43504_RS01650) waaF 322010..323059 (-) 1050 WP_077232351.1 lipopolysaccharide heptosyltransferase II Regulator
  HPPMSS1_RS01605 (HPATCC43504_RS01655) hisS 323121..324449 (+) 1329 WP_077232350.1 histidine--tRNA ligase -
  HPPMSS1_RS01610 (HPATCC43504_RS01660) asd 324436..325476 (+) 1041 WP_077232349.1 aspartate-semialdehyde dehydrogenase -
  HPPMSS1_RS01615 (HPATCC43504_RS01665) - 325908..326918 (+) 1011 WP_077232348.1 DUF874 family protein -
  HPPMSS1_RS01620 (HPATCC43504_RS01670) - 327158..327901 (-) 744 WP_002203616.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39428.12 Da        Isoelectric Point: 9.2347

>NTDB_id=57427 HPPMSS1_RS01600 WP_077232351.1 322010..323059(-) (waaF) [Helicobacter pylori strain PMSS1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKNHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIECIAILDLFITNDSGPMHAAASVQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEATRTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=57427 HPPMSS1_RS01600 WP_077232351.1 322010..323059(-) (waaF) [Helicobacter pylori strain PMSS1]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAAAACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAAT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCTTTATTGTTCCAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGTGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAGGCCACTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.439

99.14

0.381

Multiple sequence alignment