Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG38_RS00645 Genome accession   NZ_CP094080
Coordinates   143959..145194 (+) Length   411 a.a.
NCBI ID   WP_245101299.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138959..150194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS00630 (MPG38_00630) - 139371..141305 (+) 1935 WP_245101626.1 type IA DNA topoisomerase -
  MPG38_RS07970 - 141305..141433 (+) 129 WP_001185489.1 hypothetical protein -
  MPG38_RS00635 (MPG38_00635) - 141435..142421 (+) 987 WP_245101297.1 VirB8/TrbF family protein -
  MPG38_RS00640 (MPG38_00640) - 142421..143962 (+) 1542 WP_245101298.1 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG38_RS00645 (MPG38_00645) comB10 143959..145194 (+) 1236 WP_245101299.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG38_RS00650 (MPG38_00650) - 145264..145557 (+) 294 WP_000671329.1 hypothetical protein -
  MPG38_RS00655 (MPG38_00655) - 145550..145813 (+) 264 WP_000564648.1 hypothetical protein -
  MPG38_RS00660 (MPG38_00660) - 145810..146109 (+) 300 WP_245101300.1 hypothetical protein -
  MPG38_RS00665 (MPG38_00665) - 146109..147050 (+) 942 WP_245101301.1 ATPase, T2SS/T4P/T4SS family -
  MPG38_RS00670 (MPG38_00670) - 147047..147502 (+) 456 WP_025276161.1 hypothetical protein -
  MPG38_RS00675 (MPG38_00675) - 147499..147786 (+) 288 WP_245101302.1 hypothetical protein -
  MPG38_RS00680 (MPG38_00680) - 147792..148348 (+) 557 Protein_133 hypothetical protein -
  MPG38_RS00685 (MPG38_00685) - 148349..150076 (+) 1728 WP_245101303.1 type IV secretory system conjugative DNA transfer family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 46468.59 Da        Isoelectric Point: 10.0008

>NTDB_id=574261 MPG38_RS00645 WP_245101299.1 143959..145194(+) (comB10) [Helicobacter pylori strain Hpfe099]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPISIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIIAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=574261 MPG38_RS00645 WP_245101299.1 143959..145194(+) (comB10) [Helicobacter pylori strain Hpfe099]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACACTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAATCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGTAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAATCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGATTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAATCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAACCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(192-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.483

70.56

0.384